RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LHFPL3Q86UP9 236 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 SLC30A8Q8IWU4 369 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 LRRC17Q8N6Y2 441 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 TTLQ8NG68 377 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 MARC2Q969Z3 335 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 SLC35A5Q9BS91 424 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 RDH8Q9NYR8 311 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 TRPM5Q9NZQ8 1165 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 KCMF1Q9P0J7 381 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 GPR52Q9Y2T5 361 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 SF3B6Q9Y3B4 125 aaKnown RBP12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 PCDHB7Q9Y5E2 793 aa12.79□□□□□ -0.36
CCDC88C-201ENST00000331194 GNG14A0A1W2PPG7 69 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 HRO43593 1189 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 MPZL2O60487 215 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 CD160O95971 181 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 TPOP07202 933 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 IDSP22304 550 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 HMGCLP35914 325 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 BDKRB1P46663 353 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 VSX2P58304 361 aaPredicted RBP12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SRP54P61011 504 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 CDK6Q00534 326 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SF3A2Q15428 464 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 ATP13A5Q4VNC0 1218 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 GARNL3Q5VVW2 1013 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SHEQ5VZ18 495 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 CXCL17Q6UXB2 119 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 KRT74Q7RTS7 529 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 HMGN2P46Q86SG4 172 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 UCN3Q969E3 161 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SAMD11Q96NU1 681 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SORCS2Q96PQ0 1159 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SAP130Q9H0E3 1048 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 RPL36Q9Y3U8 105 aaKnown RBP12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 ENPP4Q9Y6X5 453 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 CD8B2A6NJW9 211 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 M0QZQ0 153 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 KDELR3O43731 214 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SERPINI2O75830 405 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 CD8BP10966 210 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 ELK1P19419 428 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 ARF5P84085 180 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 DSC1Q08554 894 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 HEPACAMQ14CZ8 416 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 SLC5A12Q1EHB4 618 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 GCNT6Q5T4J0 391 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 USP45Q70EL2 814 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 TRILQ7L0X0 811 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 TECPR1Q7Z6L1 1165 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 ADGRD2Q7Z7M1 963 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 CHCHD4Q8N4Q1 142 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 LMNTD1Q8N9Z9 388 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 TMEM163Q8TC26 289 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 ST8SIA2Q92186 375 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 AP2M1Q96CW1 435 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 LRR1Q96L50 414 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 KLHL15Q96M94 604 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 TMEM161AQ9NX61 479 aa12.78□□□□□ -0.36
CCDC88C-201ENST00000331194 H3BNC9 293 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 OSMP13725 252 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 CBX5P45973 191 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 PPP3R1P63098 170 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 IRF8Q02556 426 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 DOC2AQ14183 400 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 PLK5Q496M5 336 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 C6orf132Q5T0Z8 1188 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 RNF219Q5W0B1 726 aaPredicted RBP12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 MSANTD1Q6ZTZ1 278 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 KANSL1Q7Z3B3 1105 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 KIAA1143Q96AT1 154 aaPredicted RBP12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 SIPA1Q96FS4 1042 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 RBCK1Q9BYM8 510 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 MAGEH1Q9H213 219 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 CPNE7Q9UBL6 633 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 HCN2Q9UL51 889 aa12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 PPIEQ9UNP9 301 aaKnown RBP12.77□□□□□ -0.36
CCDC88C-201ENST00000331194 HMGA2P52926 109 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 SNRPGP62308 76 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 BOP1Q14137 746 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 TUSC1Q2TAM9 212 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 XKR6Q5GH73 641 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 CRB2Q5IJ48 1285 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 ACSM5Q6NUN0 579 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 METTL2BQ6P1Q9 378 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 FAM9CQ8IZT9 166 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 GEMIN6Q8WXD5 167 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 POLR2J3Q9H1A7 115 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 ABCG5Q9H222 651 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 PIGUQ9H490 435 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 CTPS2Q9NRF8 586 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 THSD1Q9NS62 852 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 SZT2Q5T011 3432 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 HELZP42694 1942 aaKnown RBP12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 DSPPQ9NZW4 1301 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 E7EQ34 232 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC30A4O14863 429 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 PPM1BO75688 479 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 RHOCP08134 193 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 ACRV1P26436 265 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms