RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 IER5LQ5T953 404 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 OR2T33Q8NG76 320 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 RHBDF1Q96CC6 855 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 MKLN1Q9UL63 735 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 A0A0J9YY10 115 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 A8MVJ9 347 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 TOR1BO14657 336 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 HSPA12AO43301 675 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 SPARCP09486 303 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 S1PR1P21453 382 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 ERVPABLB-1P60509 514 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 COL9A2Q14055 689 aaPredicted RBP17.68■□□□□ 0.42
PCDH1-201ENST00000287008 BTBD16Q32M84 506 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 C16orf78Q8WTQ4 265 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 NANSQ9NR45 359 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 HPF1Q9NWY4 346 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 HTR3EA5X5Y0 456 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 SCAMP2O15127 329 aaKnown RBP17.68■□□□□ 0.42
PCDH1-201ENST00000287008 CDC40O60508 579 aaKnown RBP eCLIP17.68■□□□□ 0.42
PCDH1-201ENST00000287008 HOXD9P28356 352 aaPredicted RBP17.68■□□□□ 0.42
PCDH1-201ENST00000287008 ZNF789Q5FWF6 425 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 BLOC1S3Q6QNY0 202 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 OR51G2Q8NGK0 314 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 MRPL38Q96DV4 380 aaKnown RBP17.68■□□□□ 0.42
PCDH1-201ENST00000287008 ACSL6Q9UKU0 697 aa17.68■□□□□ 0.42
PCDH1-201ENST00000287008 SEC14L5O43304 696 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 ORC5O43913 435 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 UGDHO60701 494 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 CER1O95813 267 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 F8A1P23610 371 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 BLMHQ13867 455 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 ARHGAP19Q14CB8 494 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 PAQR9Q6ZVX9 377 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 GID4Q8IVV7 300 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 TTYH2Q9BSA4 534 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 ZBP1Q9H171 429 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 ZNF639Q9UID6 485 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 PRAMEF2O60811 474 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 IRF4Q15306 451 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 SGTBQ96EQ0 304 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 PIP5K1AQ99755 562 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 GMPRP36959 345 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 FOXK1P85037 733 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 CTBSQ01459 385 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 CRYZQ08257 329 aaKnown RBP17.67■□□□□ 0.42
PCDH1-201ENST00000287008 SWT1Q5T5J6 900 aaKnown RBP17.67■□□□□ 0.42
PCDH1-201ENST00000287008 ALKAL1Q6UXT8 129 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 TREML1Q86YW5 311 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 TMEFF1Q8IYR6 380 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 MDGA1Q8NFP4 955 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 L3HYPDHQ96EM0 354 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 HOXD1Q9GZZ0 328 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 TOR3AQ9H497 397 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 POU2F3Q9UKI9 436 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 ANKRD12Q6UB98 2062 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 MYH6P13533 1939 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 CCNKO75909 580 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 GCGRP47871 477 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 GALNT1Q10472 559 aaPredicted RBP17.67■□□□□ 0.42
PCDH1-201ENST00000287008 FGL2Q14314 439 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 SLC15A3Q8IY34 581 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 NAXEQ8NCW5 288 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 SLC39A13Q96H72 371 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 SERINC2Q96SA4 455 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 TMED9Q9BVK6 235 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 SP140LQ9H930 580 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 TBC1D24Q9ULP9 559 aa17.67■□□□□ 0.42
PCDH1-201ENST00000287008 AURKAO14965 403 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 ITIH1P19827 911 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 MAOBP27338 520 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 CTSCP53634 463 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 THOC7Q6I9Y2 204 aaKnown RBP17.66■□□□□ 0.42
PCDH1-201ENST00000287008 HMGN2P46Q86SG4 172 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 PNPLA1Q8N8W4 532 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 KCNK12Q9HB15 430 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 TMEM14AQ9Y6G1 99 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 EEDO75530 441 aaKnown RBP17.66■□□□□ 0.42
PCDH1-201ENST00000287008 CBFBQ13951 182 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 LCTLQ6UWM7 567 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 OR2L8Q8NGY9 312 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 RDH12Q96NR8 316 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 ALOXE3Q9BYJ1 711 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 ARNT2Q9HBZ2 717 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 SIT1Q9Y3P8 196 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 BCAT2O15382 392 aaPredicted RBP17.66■□□□□ 0.42
PCDH1-201ENST00000287008 GSTM2P28161 218 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 TSTQ16762 297 aaKnown RBP17.66■□□□□ 0.42
PCDH1-201ENST00000287008 LRIT3Q3SXY7 679 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 UNQ6126/PRO20091Q6UXV3 157 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 GAREM2Q75VX8 874 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 AKAP14Q86UN6 197 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 ARFGAP1Q8N6T3 406 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 ECHDC3Q96DC8 303 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 ITPAQ9BY32 194 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 DCSTAMPQ9H295 470 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 KLHL42Q9P2K6 505 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 NAV1Q8NEY1 1877 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 ANHXE9PGG2 379 aa17.66■□□□□ 0.42
PCDH1-201ENST00000287008 RLN2P04090 185 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms