RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 XKRXQ6PP77 449 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 ZNF517Q6ZMY9 492 aaPredicted RBP18.32■□□□□ 0.52
UPF1-201ENST00000262803 ANKLE1Q8NAG6 615 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 SGTBQ96EQ0 304 aa18.32■□□□□ 0.52
UPF1-201ENST00000262803 A0A1W2PP55 124 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 VSTM2BA6NLU5 285 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 GRXCR1A8MXD5 290 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 DNAJB6O75190 326 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 BPNT1O95861 308 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 GABRA3P34903 492 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 SERTAD2Q14140 314 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 NPWQ8N729 165 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 SLC30A2Q9BRI3 323 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 MYH11P35749 1972 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 OR6C70A6NIJ9 312 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 PABPC4LP0CB38 370 aaKnown RBP18.31■□□□□ 0.52
UPF1-201ENST00000262803 ETV3P41162 512 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 DPY19L3Q6ZPD9 716 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 UBE2Q1Q7Z7E8 422 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 TRIM74Q86UV6 250 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 MINDY1Q8N5J2 469 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 FUZQ9BT04 418 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 SLC22A31A6NKX4 558 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 GPR89AB7ZAQ6 455 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 YES1P07947 543 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 GPR89BP0CG08 455 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 ARSDP51689 593 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 C6orf141Q5SZD1 244 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 CARM1Q86X55 608 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 OR6N2Q8NGY6 317 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 ZNF296Q8WUU4 475 aaPredicted RBP18.31■□□□□ 0.52
UPF1-201ENST00000262803 BORCS7-ASMTA0A0B4J1R7 106 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 CIB4A0PJX0 185 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 MAB21L1Q13394 359 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 VMACQ2NL98 169 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 PSAPL1Q6NUJ1 521 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 SLC39A5Q6ZMH5 540 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 SSX6Q7RTT6 188 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 FIBINQ8TAL6 211 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 RTP4Q96DX8 246 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 GPR174Q9BXC1 333 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 HSPE1-MOB4S4R3N1 261 aa18.31■□□□□ 0.52
UPF1-201ENST00000262803 PLD2O14939 933 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 PRKYO43930 277 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 IGHEP01854 428 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 THBS2P35442 1172 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 TDGQ13569 410 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 ASRGL1Q7L266 308 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 PMM1Q92871 262 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 DDIT4LQ96D03 193 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 CTSAP10619 480 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 GLDCP23378 1020 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 CRISP1P54107 249 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 BLOC1S3Q6QNY0 202 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 MRPL41Q8IXM3 137 aaKnown RBP18.3■□□□□ 0.52
UPF1-201ENST00000262803 OR8H3Q8N146 312 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 CNIH3Q8TBE1 160 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 BRF2Q9HAW0 419 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 CICQ96RK0 1608 aaPredicted RBP18.3■□□□□ 0.52
UPF1-201ENST00000262803 IGKV6D-21A0A0A0MT36 114 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 EEDO75530 441 aaKnown RBP18.3■□□□□ 0.52
UPF1-201ENST00000262803 CD3GP09693 182 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 TMBIM6P55061 237 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 PHC1P78364 1004 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 ANKDD1AQ495B1 522 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 PGM2L1Q6PCE3 622 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 RAB11FIP2Q7L804 512 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 DHDHQ9UQ10 334 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 NOP16Q9Y3C1 178 aaKnown RBP18.3■□□□□ 0.52
UPF1-201ENST00000262803 FRKP42685 505 aaPredicted RBP18.3■□□□□ 0.52
UPF1-201ENST00000262803 CD83Q01151 205 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 DNASE1L3Q13609 305 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 GPR32O75388 356 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 OR4C11Q6IEV9 310 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 FCAMRQ8WWV6 532 aa18.3■□□□□ 0.52
UPF1-201ENST00000262803 VILLO15195 856 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 RHCEP18577 417 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 FDXRP22570 491 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 HYAL2Q12891 473 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 SLAMF1Q13291 335 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 CHRFAM7AQ494W8 412 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 CENPSQ8N2Z9 138 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 METTL25Q8N6Q8 603 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 OR5M3Q8NGP4 307 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 HOXB13Q92826 284 aaPredicted RBP18.29■□□□□ 0.52
UPF1-201ENST00000262803 PAAF1Q9BRP4 392 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 SOBPA7XYQ1 873 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 STC2O76061 302 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 RPS3P23396 243 aaKnown RBP eCLIP18.29■□□□□ 0.529e-7■■■■□ 24.7
UPF1-201ENST00000262803 BORAQ6PGQ7 559 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 GPR137CQ8N3F9 429 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 WDR77Q9BQA1 342 aaPredicted RBP18.29■□□□□ 0.52
UPF1-201ENST00000262803 GPR62Q9BZJ7 368 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 DNAJC15Q9Y5T4 150 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 EIF1AYO14602 144 aaKnown RBP18.29■□□□□ 0.52
UPF1-201ENST00000262803 SPARCP09486 303 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 HOXC13P31276 330 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 GALK2Q01415 458 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 CYP27C1Q4G0S4 372 aa18.29■□□□□ 0.52
UPF1-201ENST00000262803 MRPL10Q7Z7H8 261 aaKnown RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms