RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PROKR1Q8TCW9 393 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 ELP5Q8TE02 316 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 STRADBQ9C0K7 418 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 VNN3Q9NY84 501 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 ERVK-18Q9QC07 812 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 COL1A1P02452 1464 aaPredicted RBP12.97□□□□□ -0.33
SF3A1-201ENST00000215793 TRAV6A0A075B6T7 132 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 SH3D21A4FU49 640 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 GNAO1P09471 354 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 TMEM69Q5SWH9 247 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 GRHL2Q6ISB3 625 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 TMPRSS9Q7Z410 1059 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 POGLUT1Q8NBL1 392 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 MR1Q95460 341 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 FKBP10Q96AY3 582 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 TMEM121BQ9BXQ6 578 aaPredicted RBP12.97□□□□□ -0.33
SF3A1-201ENST00000215793 ADAMTS6Q9UKP5 1117 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 SLC7A11Q9UPY5 501 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 DHDHQ9UQ10 334 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 NPC1O15118 1278 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 ADAP00813 363 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 ADORA3P0DMS8 318 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 MAP2K3P46734 347 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 MAN2A2P49641 1150 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 ALG10BQ5I7T1 473 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 GTF2IRD2BQ6EKJ0 949 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 DCDC5Q6ZRR9 648 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 GTF2IRD2Q86UP8 949 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 CLEC4EQ9ULY5 219 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 WDR37Q9Y2I8 494 aa12.97□□□□□ -0.33
SF3A1-201ENST00000215793 SCAMP2O15127 329 aaKnown RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 PABPC4LP0CB38 370 aaKnown RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 RPS3P23396 243 aaKnown RBP eCLIP12.96□□□□□ -0.331e-9■■■□□ 17.3
SF3A1-201ENST00000215793 AK4P27144 223 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 GSCP56915 257 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 KANK2Q63ZY3 851 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 LHFPL3Q86UP9 236 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 SCRN2Q96FV2 425 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 LRR1Q96L50 414 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 IL17FQ96PD4 163 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF696Q9H7X3 374 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 FAM118AQ9NWS6 357 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 C2orf78A6NCI8 922 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 DUX1O43812 170 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 GTF2F2P13984 249 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 RAB28P51157 221 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 AIMP2Q13155 320 aaKnown RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 NFE2L1Q14494 772 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 PON2Q15165 354 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 C3orf33Q6P1S2 294 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 RANBP10Q6VN20 620 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 SSX6Q7RTT6 188 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 GATSQ8NAP1 163 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 BMFQ96LC9 184 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF778Q96MU6 729 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 WDR77Q9BQA1 342 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 TTTY10Q9BZA0 68 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF350Q9GZX5 532 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 PREBQ9HCU5 417 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 CD93Q9NPY3 652 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 BORCS7-ASMTA0A0B4J1R7 106 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 SNNO75324 88 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 CDC123O75794 336 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 C6P13671 934 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 PRKCAP17252 672 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 ZNF81P51508 661 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 ISCA2Q86U28 154 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 TSPYL5Q86VY4 417 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 Q8N402 240 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 OR5L2Q8NGL0 311 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 PGAP3Q96FM1 320 aaPredicted RBP12.96□□□□□ -0.33
SF3A1-201ENST00000215793 BEX2Q9BXY8 128 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 BEX1Q9HBH7 125 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 TMEM45AQ9NWC5 275 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 SUSD2Q9UGT4 822 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 GABRQQ9UN88 632 aa12.96□□□□□ -0.33
SF3A1-201ENST00000215793 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.96□□□□□ -0.34
SF3A1-201ENST00000215793 IGKV6D-21A0A0A0MT36 114 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 TRIM64A6NGJ6 449 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 M0R129 80 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 DENRO43583 198 aaKnown RBP12.96□□□□□ -0.34
SF3A1-201ENST00000215793 MAP2K4P45985 399 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 OR4D1Q15615 310 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 UAP1L1Q3KQV9 507 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 CHRFAM7AQ494W8 412 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 PM20D1Q6GTS8 502 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 OR4C11Q6IEV9 310 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 ARSKQ6UWY0 536 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 TMEM107Q6UX40 140 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 ZER1Q7Z7L7 766 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 ZNF709Q8N972 641 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 NAXEQ8NCW5 288 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 OR52N2Q8NGI0 321 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 OR8S1Q8NH09 359 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 SOX17Q9H6I2 414 aaPredicted RBP12.96□□□□□ -0.34
SF3A1-201ENST00000215793 PCTPQ9UKL6 214 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 CYP8B1Q9UNU6 501 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 ST14Q9Y5Y6 855 aa12.96□□□□□ -0.34
SF3A1-201ENST00000215793 HEPACAM2A8MVW5 462 aa12.95□□□□□ -0.34
SF3A1-201ENST00000215793 GPR89AB7ZAQ6 455 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms