RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TMEM38AQ9H6F2 299 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SPACA6W5XKT8 324 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 CPED1A4D0V7 1026 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 CYR61O00622 381 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 ARHGAP33O14559 1287 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 FCGR1AP12314 374 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 BMP2P12643 396 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 PNLIPP16233 465 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 MPIP34949 423 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 PRIM2P49643 509 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 DSTNP60981 165 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 RBBP4Q09028 425 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 TP53BP2Q13625 1128 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 TAF11Q15544 211 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 NDUFA9Q16795 377 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 PERM1Q5SV97 790 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 WDR74Q6RFH5 385 aaPredicted RBP15.89■□□□□ 0.13
CLN3-252ENST00000636907 BMP8AQ7Z5Y6 402 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 OR4N5Q8IXE1 308 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 EID2Q8N6I1 236 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 HORMAD2Q8N7B1 307 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 OR4K14Q8NGD5 310 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 OR6C4Q8NGE1 309 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 OR10Q1Q8NGQ4 319 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 OR9A2Q8NGT5 310 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SLC47A1Q96FL8 570 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 MAGED4Q96JG8 741 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 NUDT22Q9BRQ3 303 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 ASPSCR1Q9BZE9 553 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SPRTNQ9H040 489 aaPredicted RBP15.89■□□□□ 0.13
CLN3-252ENST00000636907 PRDM9Q9NQV7 894 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SEMA3GQ9NS98 782 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 IRAK4Q9NWZ3 460 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 SEMA5BQ9P283 1151 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 DTNAQ9Y4J8 743 aa15.89■□□□□ 0.13
CLN3-252ENST00000636907 A0A0A6YYC8 382 aaPredicted RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 HYKKA2RU49 373 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 FAM227AF5H4B4 570 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 I3L1I5 382 aaPredicted RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 FOXS1O43638 330 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 GCM2O75603 506 aaPredicted RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 CER1O95813 267 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 XKP51811 444 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 RAB38P57729 211 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 EEF1A2Q05639 463 aaKnown RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 SCARB2Q14108 478 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 TCTE1Q5JU00 501 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 TNFAIP8L2Q6P589 184 aaPredicted RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 TMEM107Q6UX40 140 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 CEACAM20Q6UY09 585 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 TMEM64Q6YI46 380 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 SZRD1Q7Z422 152 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 EID3Q8N140 333 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 ANKFN1Q8N957 763 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 FAM181AQ8N9Y4 354 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 NFKBIDQ8NI38 313 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 N4BP2L2Q92802 583 aaPredicted RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 ZCCHC3Q9NUD5 404 aaKnown RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 GMEB2Q9UKD1 530 aa15.88■□□□□ 0.13
CLN3-252ENST00000636907 SAMD4AQ9UPU9 718 aaKnown RBP15.88■□□□□ 0.13
CLN3-252ENST00000636907 CHST10O43529 356 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 ZNF682O95780 498 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 ARAFP10398 606 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 AQP1P29972 269 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 ARL4DP49703 201 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 AQP4P55087 323 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 HSD11B2P80365 405 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 LTB4RQ15722 352 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 GPR19Q15760 415 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 ATP6AP1Q15904 470 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 PRSS42Q7Z5A4 293 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 ZC3H7AQ8IWR0 971 aaKnown RBP15.87■□□□□ 0.13
CLN3-252ENST00000636907 LRRC25Q8N386 305 aaPredicted RBP15.87■□□□□ 0.13
CLN3-252ENST00000636907 TTC29Q8NA56 475 aaPredicted RBP15.87■□□□□ 0.13
CLN3-252ENST00000636907 ICA1LQ8NDH6 482 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 CATSPER1Q8NEC5 780 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 SFXN5Q8TD22 340 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 EME1Q96AY2 570 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 PYURFQ96I23 114 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 SLC35G5Q96KT7 338 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 SMOC1Q9H4F8 434 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 SERHL2Q9H4I8 314 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 MAGIXQ9H6Y5 334 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 CLCA2Q9UQC9 943 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 ASXL3Q9C0F0 2248 aa15.87■□□□□ 0.13
CLN3-252ENST00000636907 FITM1A5D6W6 292 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 A8MU76 341 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 MC3RP41968 323 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 CRYBA2P53672 197 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 CDK6Q00534 326 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 ID2Q02363 134 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 FAM53BQ14153 422 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 ZNF630Q2M218 657 aaPredicted RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 GARNL3Q5VVW2 1013 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 CBLL1Q75N03 491 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 SAMD14Q8IZD0 417 aaPredicted RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 D2HGDHQ8N465 521 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 POP5Q969H6 163 aaKnown RBP15.86■□□□□ 0.13
CLN3-252ENST00000636907 TBC1D20Q96BZ9 403 aa15.86■□□□□ 0.13
CLN3-252ENST00000636907 CENPNQ96H22 339 aaPredicted RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms