RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 FREM1Q5H8C1 2179 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 ALPK2Q86TB3 2170 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 H0Y3Z8 333 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 HRKO00198 91 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 TMCC2O75069 709 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 MFAP3LO75121 409 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 ZSCAN5DPP0CG00 497 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 CERS1P27544 350 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 MSH2P43246 934 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 OASLQ15646 514 aaKnown RBP13.21□□□□□ -0.29
CLN3-249ENST00000636685 NTRK2Q16620 822 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 ANKRD34AQ69YU3 496 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 UGT3A1Q6NUS8 523 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 VWA1Q6PCB0 445 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 TMEM64Q6YI46 380 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 TMPRSS11BQ86T26 416 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 PALM2Q8IXS6 379 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 KLHDC8AQ8IYD2 350 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 DND1Q8IYX4 353 aaKnown RBP13.21□□□□□ -0.29
CLN3-249ENST00000636685 DOK4Q8TEW6 326 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 ATL1Q8WXF7 558 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 STARD4Q96DR4 205 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 SENP5Q96HI0 755 aaPredicted RBP13.21□□□□□ -0.29
CLN3-249ENST00000636685 RILPQ96NA2 401 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 G6PC3Q9BUM1 346 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 OPN3Q9H1Y3 402 aaPredicted RBP13.21□□□□□ -0.29
CLN3-249ENST00000636685 ACBD3Q9H3P7 528 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 PELI2Q9HAT8 420 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 ARL15Q9NXU5 204 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 CLCF1Q9UBD9 225 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 DAPP1Q9UN19 280 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 SOX13Q9UN79 622 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 LAMP3Q9UQV4 416 aa13.21□□□□□ -0.29
CLN3-249ENST00000636685 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.2□□□□□ -0.3
CLN3-249ENST00000636685 ANKRD33BA6NCL7 494 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 EIF3FO00303 357 aaPredicted RBP13.2□□□□□ -0.3
CLN3-249ENST00000636685 IGKV3-11P04433 115 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 HIST1H2AGP0C0S8 130 aaPredicted RBP13.2□□□□□ -0.3
CLN3-249ENST00000636685 POU2F1P14859 743 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 CPN1P15169 458 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 HIST1H2ADP20671 130 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 MASP1P48740 699 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 PCYT1AP49585 367 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 PLA2G16P53816 162 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 RPS4XP62701 263 aaKnown RBP13.2□□□□□ -0.3
CLN3-249ENST00000636685 SP140Q13342 867 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 SERTAD2Q14140 314 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 EFTUD2Q15029 972 aaKnown RBP eCLIP13.2□□□□□ -0.36e-10■■■■□ 26.2
CLN3-249ENST00000636685 ETFDHQ16134 617 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 TBCELQ5QJ74 424 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 NXPE4Q6UWF7 544 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 CAND1Q86VP6 1230 aaKnown RBP13.2□□□□□ -0.3
CLN3-249ENST00000636685 ZNF611Q8N823 705 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 FAM83FQ8NEG4 500 aaPredicted RBP13.2□□□□□ -0.3
CLN3-249ENST00000636685 CCT6BQ92526 530 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 HIST1H2AHQ96KK5 128 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 UCN2Q96RP3 112 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 GAL3ST4Q96RP7 486 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 HIST1H2AJQ99878 128 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 H2AFJQ9BTM1 129 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 DYRK1BQ9Y463 629 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 MGAM2Q2M2H8 2515 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 MALRD1Q5VYJ5 2156 aa13.2□□□□□ -0.3
CLN3-249ENST00000636685 LRIT2A6NDA9 550 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 BTNL10A8MVZ5 291 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 C16orf97H3BN30 126 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 GNB5O14775 395 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 HS3ST1O14792 307 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 LIASO43766 372 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 ADAM11O75078 769 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 ACTL6AO96019 429 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 FBXW4P57775 412 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 EEF1A1P68104 462 aaKnown RBP13.19□□□□□ -0.3
CLN3-249ENST00000636685 TIAL1Q01085 375 aaKnown RBP eCLIP13.19□□□□□ -0.3
CLN3-249ENST00000636685 EEF1A1P5Q5VTE0 462 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 DGAT2L6Q6ZPD8 337 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 SH2D5Q6ZV89 423 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 PACS2Q86VP3 889 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 CNEP1R1Q8N9A8 125 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 UCN3Q969E3 161 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 ART5Q96L15 291 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 KCNK17Q96T54 332 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 SLCO5A1Q9H2Y9 848 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 PAK5Q9P286 719 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 TRMT6Q9UJA5 497 aaKnown RBP13.19□□□□□ -0.3
CLN3-249ENST00000636685 MAPRE3Q9UPY8 281 aa13.19□□□□□ -0.3
CLN3-249ENST00000636685 A0A088AWK7 358 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 LRRC14BA6NHZ5 514 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 KLF4O43474 513 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 SNX4O95219 450 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 TGM6O95932 706 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 THBDP07204 575 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 PAMP19021 973 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 ZNF10P21506 573 aaPredicted RBP13.18□□□□□ -0.3
CLN3-249ENST00000636685 THBS2P35442 1172 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 RGS4P49798 205 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 BEX5Q5H9J7 111 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 LRRC8EQ6NSJ5 796 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 GRAMD2AQ8IUY3 354 aa13.18□□□□□ -0.3
CLN3-249ENST00000636685 OR4N5Q8IXE1 308 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms