RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 EFHD2Q96C19 240 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 MENTQ9BUN1 341 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 ACAT2Q9BWD1 397 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 KLHL25Q9H0H3 589 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 C11orf16Q9NQ32 467 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 TAS2R7Q9NYW3 318 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 TAC3Q9UHF0 121 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 GPC6Q9Y625 555 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 KIAA0355O15063 1070 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 GTF2E2P29084 291 aaKnown RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 SEPHS1P49903 392 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 CCR8P51685 355 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 CNTN1Q12860 1018 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 OCLNQ16625 522 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 FNDC3BQ53EP0 1204 aaKnown RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 CD300LDQ6UXZ3 194 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 GRASPQ7Z6J2 395 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 HEATR4Q86WZ0 1026 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 OR4D11Q8NGI4 311 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 ZBED6CLQ96FA7 236 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 TMEM80Q96HE8 168 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 ZNF607Q96SK3 696 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 ROGDIQ9GZN7 287 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 SERHL2Q9H4I8 314 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 C3orf14Q9HBI5 128 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 CUEDC1Q9NWM3 386 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 SLC23A2Q9UGH3 650 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 TRAPPC4Q9Y296 219 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 TMEM98Q9Y2Y6 226 aa12.11□□□□□ -0.47
LINC00540-203ENST00000631321 MTCL1Q9Y4B5 1905 aaKnown RBP12.11□□□□□ -0.47
LINC00540-203ENST00000631321 TMPRSS11DO60235 418 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 RPN2P04844 631 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 SPNP16150 400 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 XKP51811 444 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 SPANXN2Q5MJ10 180 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 OR8J1Q8NGP2 316 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 ING5Q8WYH8 240 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 RAB8BQ92930 207 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 IL4I1Q96RQ9 567 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 SDHCQ99643 169 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 CCDC32Q9BV29 185 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 CRNNQ9UBG3 495 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 RPL36Q9Y3U8 105 aaKnown RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 A0A1W2PPV9 198 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 A0A1W2PRQ8 180 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 ANHXE9PGG2 379 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 KMOO15229 486 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 OR10H3O60404 316 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 DLGAP3O95886 979 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 DNTTP04053 509 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 TP53P04637 393 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 IGFBP1P08833 259 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 EPCAMP16422 314 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 ALOX12P18054 663 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 CD72P21854 359 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 TRA2BP62995 288 aaKnown RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 HSPB3Q12988 150 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 SPDYE7PQ495Y7 208 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 SLC25A30Q5SVS4 291 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 MFSD4BQ5TF39 518 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 UBE3DQ7Z6J8 389 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 NUDT13Q86X67 352 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 RBM45Q8IUH3 476 aaKnown RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 PLA2G15Q8NCC3 412 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 FLCNQ8NFG4 579 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 RGMAQ96B86 450 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 RSPRY1Q96DX4 576 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 SLC6A18Q96N87 628 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 NUAK2Q9H093 628 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 DDX31Q9H8H2 851 aaKnown RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 SEC14L4Q9UDX3 406 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 PRKAB1Q9Y478 270 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 DNMT3AQ9Y6K1 912 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-203ENST00000631321 PTPRSQ13332 1948 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 LRRK1Q38SD2 2015 aa12.1□□□□□ -0.47
LINC00540-203ENST00000631321 PRAMEF27A3QJZ7 478 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SNPHO15079 494 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 CSO75390 466 aaKnown RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 CCT3P49368 545 aaKnown RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 TPTEP56180 551 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 ZNF91Q05481 1191 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SPHARQ15513 63 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 GAB4Q2WGN9 574 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 METRNLQ641Q3 311 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 GDPD3Q7L5L3 318 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 TRIM69Q86WT6 500 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 KRT73Q86Y46 540 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 TBC1D19Q8N5T2 526 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 GALNT6Q8NCL4 622 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 PROKR2Q8NFJ6 384 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SLC7A13Q8TCU3 470 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 CXorf40AQ8TE69 158 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 TREX2Q9BQ50 279 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 WFDC6Q9BQY6 131 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 MND1Q9BWT6 205 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 POLR2J3Q9H1A7 115 aaKnown RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 TMEM245Q9H330 911 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SEMA3GQ9NS98 782 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 ZSCAN32Q9NX65 697 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms