RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 FGF17O60258 216 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 SMPD2O60906 423 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 GOSR1O95249 250 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 ACSL3O95573 720 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 FBXO45P0C2W1 286 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 CTSSP25774 331 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 SERPINB3P29508 390 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 OPRM1P35372 400 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 STT3AP46977 705 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 CPA2P48052 419 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 SLC6A12P48065 614 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 PPP2R2BQ00005 443 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 CDKL1Q00532 357 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 SF3B4Q15427 424 aaKnown RBP eCLIP13.46□□□□□ -0.25
PNKP-218ENST00000625299 FBXO48Q5FWF7 155 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 HP1BP3Q5SSJ5 553 aaPredicted RBP13.46□□□□□ -0.25
PNKP-218ENST00000625299 TEDDM1Q5T9Z0 273 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 NSUN5P2Q63ZY6 315 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 DGAT2L6Q6ZPD8 337 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 SLC29A4Q7RTT9 530 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 LUZP2Q86TE4 346 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 CXorf67Q86X51 503 aaPredicted RBP13.46□□□□□ -0.25
PNKP-218ENST00000625299 NKAPQ8N5F7 415 aaKnown RBP13.46□□□□□ -0.25
PNKP-218ENST00000625299 SNX31Q8N9S9 440 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 ZNF592Q92610 1267 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 DIO2Q92813 273 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 RHBDF1Q96CC6 855 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 RBM24Q9BX46 236 aaKnown RBP13.46□□□□□ -0.25
PNKP-218ENST00000625299 ROGDIQ9GZN7 287 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 NT5DC2Q9H857 520 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 WWOXQ9NZC7 414 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 CTNNAL1Q9UBT7 734 aa13.46□□□□□ -0.25
PNKP-218ENST00000625299 CNOT11Q9UKZ1 510 aaKnown RBP13.46□□□□□ -0.25
PNKP-218ENST00000625299 IQANK1A0A1B0GTG1 560 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 SH3D21A4FU49 640 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 INAFM1C9JVW0 142 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 SAP18O00422 153 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 CES2O00748 559 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ERN1O75460 977 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 C1QAP02745 245 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 IGKV3-11P04433 115 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ATP5A1P25705 553 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 RPL21P46778 160 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 MASP1P48740 699 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 HERVK_113P63132 956 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ERVK-8P63133 956 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 PLIN5Q00G26 463 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 MSS51Q4VC12 460 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 BICRALQ6AI39 1079 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 CXXC5Q7LFL8 322 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 UBE3DQ7Z6J8 389 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 GALNT7Q86SF2 657 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ADAMTSL2Q86TH1 951 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 IGDCC3Q8IVU1 814 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 DND1Q8IYX4 353 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 SLC15A4Q8N697 577 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ACOT4Q8N9L9 421 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 RBM18Q96H35 190 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 MS4A14Q96JA4 679 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ART5Q96L15 291 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 KRT12Q99456 494 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ERVK-6Q9BXR3 956 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 CAPS2Q9BXY5 557 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 PRDM14Q9GZV8 571 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 RBSNQ9H1K0 784 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 DNAJC11Q9NVH1 559 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.45□□□□□ -0.26
PNKP-218ENST00000625299 GALNT8Q9NY28 637 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 ZNF490Q9ULM2 529 aaPredicted RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 ERVK-19Q9WJR5 959 aa13.45□□□□□ -0.26
PNKP-218ENST00000625299 EIF3LQ9Y262 564 aaKnown RBP13.45□□□□□ -0.26
PNKP-218ENST00000625299 HIVEP2P31629 2446 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 MBD3L4A6NDZ8 208 aaPredicted RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 MBD3L3A6NE82 208 aaPredicted RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 MBD3L5A6NJ08 208 aaPredicted RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 CD8B2A6NJW9 211 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 CASKO14936 926 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 TRIM3O75382 744 aaPredicted RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 TMIGD3P0DMS9 266 aaPredicted RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 SSR2P43308 183 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 DOC2AQ14183 400 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 ZNF267Q14586 743 aaPredicted RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 EIPR1Q53HC9 387 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 DCST1Q5T197 706 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 RNASEH2BQ5TBB1 312 aaKnown RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 TRMT10BQ6PF06 316 aaKnown RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 TMEM64Q6YI46 380 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 RNF111Q6ZNA4 994 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 C9orf106Q8NAJ2 232 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 MBD3L2Q8NHZ7 208 aaPredicted RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 ANKRD49Q8WVL7 239 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 ESAMQ96AP7 390 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 PTCD3Q96EY7 689 aaKnown RBP13.44□□□□□ -0.26
PNKP-218ENST00000625299 FBXL20Q96IG2 436 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 DACH2Q96NX9 599 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 TMEM79Q9BSE2 394 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 NAT9Q9BTE0 207 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 TBCDQ9BTW9 1192 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 UGT2B28Q9BY64 529 aa13.44□□□□□ -0.26
PNKP-218ENST00000625299 PITHD1Q9GZP4 211 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms