RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ALDH9A1P49189 494 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 GPR143P51810 404 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 RPL38P63173 70 aaKnown RBP15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 HEPACAMQ14CZ8 416 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 LACTB2Q53H82 288 aaPredicted RBP15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 AGAP7PQ5VUJ5 663 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 ST13P4Q8IZP2 240 aaPredicted RBP15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 TMEM132CQ8N3T6 1108 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 APCDD1LQ8NCL9 501 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 B3GNT7Q8NFL0 401 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 OR4K14Q8NGD5 310 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 ELP5Q8TE02 316 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 PPWD1Q96BP3 646 aaKnown RBP15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 RBM18Q96H35 190 aaKnown RBP15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 AGAP4Q96P64 663 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 DGAT2Q96PD7 388 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 MYNNQ9NPC7 610 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 INTS9Q9NV88 658 aaKnown RBP15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 GIMAP2Q9UG22 337 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 PCDHGB7Q9Y5F8 929 aa15.45■□□□□ 0.06
CCDC28A-202ENST00000611852 A0A1W2PS29 197 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 C17orf105B2RV13 164 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 PEX11AO75192 247 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 ALPPP05187 535 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 SLC35E2P0CK97 266 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 TNNI3P19429 210 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 TACR1P25103 407 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 HK2P52789 917 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 PLIN5Q00G26 463 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 ATP6AP1LQ52LC2 224 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 C6orf136Q5SQH8 315 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 FAM71E1Q6IPT2 247 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 H3F3CQ6NXT2 135 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 DGAT2L6Q6ZPD8 337 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 ASB18Q6ZVZ8 466 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 SIRT6Q8N6T7 355 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 OR14A16Q8NHC5 309 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 DAZLQ92904 295 aaKnown RBP15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 EGLN2Q96KS0 407 aa15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 WBP11Q9Y2W2 641 aaKnown RBP15.44■□□□□ 0.06
CCDC28A-202ENST00000611852 COX7A2P14406 83 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 SDC1P18827 310 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 SOX11P35716 441 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 XKP51811 444 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF750Q32MQ0 723 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 CRB2Q5IJ48 1285 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 ISLR2Q6UXK2 745 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 IKBIPQ70UQ0 350 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 KIF2BQ8N4N8 673 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 MORN4Q8NDC4 146 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 CDC26Q8NHZ8 85 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 DYDC1Q8WWB3 177 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 NCLNQ969V3 563 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 KLHL29Q96CT2 875 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 TUBGCP3Q96CW5 907 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 PPP1R36Q96LQ0 422 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 PELOQ9BRX2 385 aaKnown RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 NUF2Q9BZD4 464 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 KCNK13Q9HB14 408 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 ZBTB20Q9HC78 741 aaPredicted RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 EHD3Q9NZN3 535 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 PTGFRNQ9P2B2 879 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 UTS2RQ9UKP6 389 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 PSME2Q9UL46 239 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF451Q9Y4E5 1061 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 SPTA1P02549 2419 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 A8MUI8 341 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 OR10H2O60403 315 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 ERAL1O75616 437 aaKnown RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 DDAH2O95865 285 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 CPMP14384 443 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 DDCP20711 480 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 GALNSP34059 522 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 C2orf80Q0P641 193 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 B3GNTL1Q67FW5 361 aaPredicted RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 FAM180BQ6P0A1 224 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 IGFL2Q6UWQ7 119 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 IGFL3Q6UXB1 125 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 SLC2A12Q8TD20 617 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 LRRC8CQ8TDW0 803 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 CNRIP1Q96F85 164 aaPredicted RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 VMP1Q96GC9 406 aa15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 MARCOQ9UEW3 520 aaPredicted RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF223Q9UK11 482 aaPredicted RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 EXO1Q9UQ84 846 aaKnown RBP15.43■□□□□ 0.06
CCDC28A-202ENST00000611852 CROCCQ5TZA2 2017 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 CNTRLQ7Z7A1 2325 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 RRP9O43818 475 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 KITP10721 976 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 BCKDHAP12694 445 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 PORP16435 677 aaPredicted RBP15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 MAPK1P28482 360 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 FEN1P39748 380 aaKnown RBP15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 CLCN2P51788 898 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 SPRED3Q2MJR0 410 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 LINC00696Q6ZRV3 163 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF321PQ8N8H1 164 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 FNDC5Q8NAU1 212 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 OR1N1Q8NGS0 311 aa15.42■□□□□ 0.06
CCDC28A-202ENST00000611852 ZNF721Q8TF20 911 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms