RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 A0A1W2PS29 197 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 C1orf226A1L170 272 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 FCHO1O14526 889 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 AZIN1O14977 448 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 DYRK3O43781 588 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 PCDH7O60245 1069 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 OR10H2O60403 315 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 PRAMEF2O60811 474 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 CHRNGP07510 517 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 BPGMP07738 259 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 MYZAPP0CAP1 466 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 CD96P40200 585 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 TRA2BP62995 288 aaKnown RBP12.89□□□□□ -0.35
UPF1-205ENST00000598209 RAE1P78406 368 aaKnown RBP12.89□□□□□ -0.35
UPF1-205ENST00000598209 OC90Q02509 493 aaPredicted RBP12.89□□□□□ -0.35
UPF1-205ENST00000598209 KCNC4Q03721 635 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 OR1C1Q15619 314 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 ZNF468Q5VIY5 522 aaPredicted RBP12.89□□□□□ -0.35
UPF1-205ENST00000598209 HSDL2Q6YN16 418 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 DGAT2L6Q6ZPD8 337 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 TRIM46Q7Z4K8 759 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 MMP21Q8N119 569 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 MDS2Q8NDY4 140 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 OR4K14Q8NGD5 310 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 ZNF721Q8TF20 911 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 PGM2Q96G03 612 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 SIGLEC12Q96PQ1 595 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 FAIM2Q9BWQ8 316 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 SSU72Q9NP77 194 aaKnown RBP12.89□□□□□ -0.35
UPF1-205ENST00000598209 COPS7AQ9UBW8 275 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 FIS1Q9Y3D6 152 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 SVILO95425 2214 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 EML6Q6ZMW3 1958 aa12.89□□□□□ -0.35
UPF1-205ENST00000598209 ESPL1Q14674 2120 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 GNG14A0A1W2PPG7 69 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 CDK2AP1O14519 115 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 VPS4BO75351 444 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 ITGA10O75578 1167 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 SLC35E2P0CK97 266 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 TIA1P31483 386 aaKnown RBP eCLIP12.88□□□□□ -0.35
UPF1-205ENST00000598209 SERPINB4P48594 390 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 ALDH9A1P49189 494 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 ARL13AQ5H913 290 aaPredicted RBP12.88□□□□□ -0.35
UPF1-205ENST00000598209 ZNF766Q5HY98 468 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 SLC48A1Q6P1K1 146 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 GALNT11Q8NCW6 608 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 DOK4Q8TEW6 326 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 RIT1Q92963 219 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 C11orf24Q96F05 449 aaPredicted RBP12.88□□□□□ -0.35
UPF1-205ENST00000598209 SENP5Q96HI0 755 aaPredicted RBP12.88□□□□□ -0.35
UPF1-205ENST00000598209 PKNOX2Q96KN3 472 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 ART5Q96L15 291 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 CNPPD1Q9BV87 410 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 EBPLQ9BY08 206 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 LIN28AQ9H9Z2 209 aaKnown RBP12.88□□□□□ -0.35
UPF1-205ENST00000598209 EML4Q9HC35 981 aaKnown RBP12.88□□□□□ -0.35
UPF1-205ENST00000598209 RRAGDQ9NQL2 400 aaPredicted RBP12.88□□□□□ -0.35
UPF1-205ENST00000598209 SIRT5Q9NXA8 310 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 LRFN1Q9P244 771 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 CES1P1Q9UKY3 287 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 VPS4AQ9UN37 437 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 ACTL7BQ9Y614 415 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 ZGRF1Q86YA3 2104 aa12.88□□□□□ -0.35
UPF1-205ENST00000598209 GCN1Q92616 2671 aaKnown RBP12.87□□□□□ -0.35
UPF1-205ENST00000598209 BAHCC1Q9P281 2608 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 TMEM200CA6NKL6 621 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 HRKO00198 91 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 SLC28A1O00337 649 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 TM9SF1O15321 606 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 RSL1D1O76021 490 aaKnown RBP12.87□□□□□ -0.35
UPF1-205ENST00000598209 CHEK2O96017 543 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 IGKV3-11P04433 115 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 IL3P08700 152 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 CPMP14384 443 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 GALNSP34059 522 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 TRHRP34981 398 aaPredicted RBP12.87□□□□□ -0.35
UPF1-205ENST00000598209 SERPINB5P36952 375 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 CYB561P49447 251 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 HLCSP50747 726 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 XKP51811 444 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 ERVK-8P63133 956 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 RNF4P78317 190 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 ZNF267Q14586 743 aaPredicted RBP12.87□□□□□ -0.35
UPF1-205ENST00000598209 INAQ16352 499 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 SPRED3Q2MJR0 410 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 ZNF750Q32MQ0 723 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 KANK2Q63ZY3 851 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 SPINK14Q6IE38 97 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 GALNT18Q6P9A2 607 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 FAM180AQ6UWF9 173 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 C16orf47Q6ZP98 133 aaPredicted RBP12.87□□□□□ -0.35
UPF1-205ENST00000598209 NUDCD3Q8IVD9 361 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 HORMAD2Q8N7B1 307 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 OR8K3Q8NH51 312 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 GRHL3Q8TE85 626 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 C16orf78Q8WTQ4 265 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 KLHL29Q96CT2 875 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 FBXL20Q96IG2 436 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 C5orf34Q96MH7 638 aa12.87□□□□□ -0.35
UPF1-205ENST00000598209 BARD1Q99728 777 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms