RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TOR1AIP2Q8NFQ8 470 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 OR7A2PQ8NGA2 310 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 RAB8BQ92930 207 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 APIPQ96GX9 242 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 PDCD10Q9BUL8 212 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 GPN2Q9H9Y4 310 aaPredicted RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 DKKL1Q9UK85 242 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 SLC17A4Q9Y2C5 497 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 PPIL1Q9Y3C6 166 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 RP1L1Q8IWN7 2480 aaPredicted RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 ATP6V1G2O95670 118 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 AK1P00568 194 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 UBTFL6P0CB48 400 aaPredicted RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 ARNTP27540 789 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 YAP1P46937 504 aaKnown RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 C3orf38Q5JPI3 329 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 LRRC74BQ6ZQY2 392 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 FRMD1Q8N878 549 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 TMCO6Q96DC7 493 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 NARS2Q96I59 477 aaKnown RBP9.36□□□□□ -0.91
LIG3-216ENST00000593099 ZNF347Q96SE7 839 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 CLN6Q9NWW5 311 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 IKZF3Q9UKT9 509 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 PADI1Q9ULC6 663 aa9.36□□□□□ -0.91
LIG3-216ENST00000593099 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 OTOL1A6NHN0 477 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 VILLO15195 856 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TMCC2O75069 709 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 ENTPD5O75356 428 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 NME1P15531 152 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 GLB1P16278 677 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 NAT1P18440 290 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 DRD3P35462 400 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 ZNF41P51814 821 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 CDH12P55289 794 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 ELOAQ14241 798 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 FLYWCH1Q4VC44 716 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 ZDHHC21Q8IVQ6 265 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 SFTPA1Q8IWL2 248 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 LMNTD1Q8N9Z9 388 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 CLEC1AQ8NC01 280 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 NFKBIDQ8NI38 313 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 PATE1Q8WXA2 126 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 CLPTM1LQ96KA5 538 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 EPYCQ99645 322 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 MACROD1Q9BQ69 325 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 KCNN2Q9H2S1 579 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 SAV1Q9H4B6 383 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 EHD1Q9H4M9 534 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 A0A0G2JMZ2 1700 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 A0A096LPI6 279 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 SCAMP2O15127 329 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 RRP8O43159 456 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 TIPRLO75663 272 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 HIST1H1TP22492 207 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 AVPR2P30518 371 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TAS2R38P59533 333 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 MC1RQ01726 317 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 NRF1Q16656 503 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 ZIK1Q3SY52 487 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 REEP3Q6NUK4 255 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 C8orf59Q8N0T1 100 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 SFRP1Q8N474 314 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 HORMAD2Q8N7B1 307 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 OR52J3Q8NH60 311 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 CCL4L1Q8NHW4 92 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 OLIG1Q8TAK6 271 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TBC1D20Q96BZ9 403 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 CITED4Q96RK1 184 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 FANCFQ9NPI8 374 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 CTPS2Q9NRF8 586 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 DAPK2Q9UIK4 370 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 FBXO4Q9UKT5 387 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TRBV5-4A0A0C4DH59 114 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 G3V2T6 193 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 NME6O75414 186 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 PIAS2O75928 621 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 SMNDC1O75940 238 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIG3-216ENST00000593099 SDHBP21912 280 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 HOXC12P31275 282 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 FADDQ13158 208 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 NNATQ16517 81 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 CDC73Q6P1J9 531 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TMEM107Q6UX40 140 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 JAZF1Q86VZ6 243 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 SLC5A8Q8N695 610 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 OR9A4Q8NGU2 314 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 RNPEPL1Q9HAU8 725 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 PDP1Q9P0J1 537 aaPredicted RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 TESMINQ9Y4I5 508 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 RNF215Q9Y6U7 377 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 BLACEA4D250 179 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 hCG_2039718K7EN88 272 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 CHST10O43529 356 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 PRAMEF2O60811 474 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 OR1D4P47884 311 aa9.35□□□□□ -0.91
LIG3-216ENST00000593099 TRA2BP62995 288 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 DCDP81605 110 aaKnown RBP9.35□□□□□ -0.91
LIG3-216ENST00000593099 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms