RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FRMD6Q96NE9 622 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 NMRK1Q9NWW6 199 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 SEC14L3Q9UDX4 400 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 GRID1Q9ULK0 1009 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 POLEQ07864 2286 aa22.2■■□□□ 1.14
SHMT1-206ENST00000579558 TLDC2A0PJX2 215 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 G3V2L1 256 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 WWP2O00308 870 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 COPEO14579 308 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 RNF224P0DH78 156 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 CRHR1P34998 444 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 HK2P52789 917 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 MAPK12P53778 367 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 PKNOX1P55347 436 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 RNF4P78317 190 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 OR5L2Q8NGL0 311 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 METTL6Q8TCB7 284 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 ASB15Q8WXK1 588 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 PSMG3-AS1Q96PY0 264 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 GSTO2Q9H4Y5 243 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 ERVK-11Q9UQG0 969 aa22.19■■□□□ 1.14
SHMT1-206ENST00000579558 KLF13Q9Y2Y9 288 aaPredicted RBP22.19■■□□□ 1.14
SHMT1-206ENST00000579558 A8MVJ9 347 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 PGRMC2O15173 223 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 PLIN3O60664 434 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 UNC5CO95185 931 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 ENO1P06733 434 aaKnown RBP22.18■■□□□ 1.14
SHMT1-206ENST00000579558 HSD3B1P14060 373 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 KRT4P19013 534 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 HSD3B2P26439 372 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 ALDH6A1Q02252 535 aaKnown RBP22.18■■□□□ 1.14
SHMT1-206ENST00000579558 GALNT1Q10472 559 aaPredicted RBP22.18■■□□□ 1.14
SHMT1-206ENST00000579558 TBL3Q12788 808 aaKnown RBP22.18■■□□□ 1.14
SHMT1-206ENST00000579558 NDUFAF5Q5TEU4 345 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 C4orf33Q8N1A6 199 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 CCDC63Q8NA47 563 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 DOK4Q8TEW6 326 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 FBXL20Q96IG2 436 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 RASL10BQ96S79 203 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 CNPPD1Q9BV87 410 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 HPF1Q9NWY4 346 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 VPS29Q9UBQ0 182 aa22.18■■□□□ 1.14
SHMT1-206ENST00000579558 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.18■■□□□ 1.14
SHMT1-206ENST00000579558 V9GYY5 206 aaPredicted RBP22.18■■□□□ 1.14
SHMT1-206ENST00000579558 GUCY1B2O75343 617 aa22.17■■□□□ 1.14
SHMT1-206ENST00000579558 ULK1O75385 1050 aa22.17■■□□□ 1.14
SHMT1-206ENST00000579558 PIK3R1P27986 724 aa22.17■■□□□ 1.14
SHMT1-206ENST00000579558 CSTF3Q12996 717 aaKnown RBP22.17■■□□□ 1.14
SHMT1-206ENST00000579558 C4orf17Q53FE4 359 aa22.17■■□□□ 1.14
SHMT1-206ENST00000579558 GPALPP1Q8IXQ4 340 aa22.17■■□□□ 1.14
SHMT1-206ENST00000579558 C1orf52Q8N6N3 182 aaKnown RBP22.17■■□□□ 1.14
SHMT1-206ENST00000579558 RDH11Q8TC12 318 aa22.17■■□□□ 1.14
SHMT1-206ENST00000579558 AENQ8WTP8 325 aaKnown RBP22.17■■□□□ 1.14
SHMT1-206ENST00000579558 TSPAN10Q9H1Z9 355 aaPredicted RBP22.17■■□□□ 1.14
SHMT1-206ENST00000579558 C12orf65Q9H3J6 166 aaKnown RBP22.17■■□□□ 1.14
SHMT1-206ENST00000579558 HRKO00198 91 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 OR6B1O95007 311 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 ESRRBO95718 433 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 LDLRP01130 860 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 IGKV3-11P04433 115 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 STSP08842 583 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 NUDT17P0C025 328 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 SLC35E2P0CK97 266 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 SOX3P41225 446 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 HTR6P50406 440 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 ERVK-8P63133 956 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 IFFO1Q0D2I5 559 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 ZNF267Q14586 743 aaPredicted RBP22.16■■□□□ 1.14
SHMT1-206ENST00000579558 SPRED3Q2MJR0 410 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 WDR93Q6P2C0 686 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 EMBQ6PCB8 327 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 IL20RBQ6UXL0 311 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 MDGA2Q7Z553 956 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 RIBC1Q8N443 379 aaPredicted RBP22.16■■□□□ 1.14
SHMT1-206ENST00000579558 CPSF7Q8N684 471 aaKnown RBP22.16■■□□□ 1.14
SHMT1-206ENST00000579558 OR4K14Q8NGD5 310 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 AGAP11Q8TF27 550 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 RIT1Q92963 219 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 MID1IP1Q9NPA3 183 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 TIMMDC1Q9NPL8 285 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.16■■□□□ 1.14
SHMT1-206ENST00000579558 ERVK-19Q9WJR5 959 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 TIMM22Q9Y584 194 aa22.16■■□□□ 1.14
SHMT1-206ENST00000579558 A0A1W2PS29 197 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 CCDC151A5D8V7 595 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 NPIPA5E9PKD4 350 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 KLRC4-KLRK1H3BQV0 150 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 LRRTM2O43300 516 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 WISP2O76076 250 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 CPA3P15088 417 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 CHN1P15882 459 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 GALNSP34059 522 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 MEOX1P50221 254 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 NAGLUP54802 743 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 NAA20P61599 178 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 SLC18A2Q05940 514 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 RBPJQ06330 500 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 CFAP157Q5JU67 520 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 SULF2Q8IWU5 870 aa22.15■■□□□ 1.14
SHMT1-206ENST00000579558 C9orf40Q8IXQ3 194 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms