RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 WDR19Q8NEZ3 1342 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 CASTOR2A6NHX0 329 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 LRRIQ4A6NIV6 560 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 MGST3O14880 152 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 LDB2O43679 373 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 ACSL4O60488 711 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 TBX19O60806 448 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 NDUFS7O75251 213 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 CSO75390 466 aaKnown RBP5.33□□□□□ -1.56
VPS53-219ENST00000576019 WDPCPO95876 746 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 LIPFP07098 398 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 IRF2P14316 349 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 ITGB6P18564 788 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 CCR1P32246 355 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 STX2P32856 288 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 NKX2-1P43699 371 aaPredicted RBP5.33□□□□□ -1.56
VPS53-219ENST00000576019 P2RX3P56373 397 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 HSF1Q00613 529 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 SULT2A1Q06520 285 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 IL10RBQ08334 325 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 ST3GAL1Q11201 340 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 ZNF268Q14587 947 aaPredicted RBP5.33□□□□□ -1.56
VPS53-219ENST00000576019 PTPAQ15257 358 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 CA9Q16790 459 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 BEND3Q5T5X7 828 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 LYSMD4Q5XG99 296 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 NCR3LG1Q68D85 454 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 C11orf63Q6NUN7 778 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 SPNS3Q6ZMD2 512 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 ZNF367Q7RTV3 350 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 SLC16A9Q7RTY1 509 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 LRRC70Q7Z2Q7 622 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 TECPR1Q7Z6L1 1165 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 KRTAP19-1Q8IUB9 90 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 STKLD1Q8NE28 680 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 OR8J1Q8NGP2 316 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 OR5R1Q8NH85 324 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 ANKRD49Q8WVL7 239 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 GIMAP1Q8WWP7 306 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 DNAAF4Q8WXU2 420 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 HAS1Q92839 578 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 EXTL1Q92935 676 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 DHX58Q96C10 678 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 PDLIM2Q96JY6 352 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 MAP6D1Q9H9H5 199 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 TRPC7Q9HCX4 862 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 GKN1Q9NS71 199 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 TMEM45AQ9NWC5 275 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 PTTG2Q9NZH5 202 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 PKD2L2Q9NZM6 624 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 PSORS1C1Q9UIG5 152 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 AGO2Q9UKV8 859 aaKnown RBP5.33□□□□□ -1.56
VPS53-219ENST00000576019 TCAF1Q9Y4C2 921 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 LOXL2Q9Y4K0 774 aa5.33□□□□□ -1.56
VPS53-219ENST00000576019 TTC41PQ6P2S7 1318 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 ANKRD61A6NGH8 418 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 TMEM150CB9EJG8 249 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 HAS3O00219 553 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 CYR61O00622 381 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 WNT9BO14905 357 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 AKAP8O43823 692 aaKnown RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 LDB3O75112 727 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 CSDE1O75534 798 aaKnown RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 ESRRBO95718 433 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 TSPAN15O95858 294 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 IL1BP01584 269 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 RALAP11233 206 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 PPP2R1AP30153 589 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 OTX2P32243 289 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 OR1D2P34982 312 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 PTGS2P35354 604 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 RPL21P46778 160 aaKnown RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 NR0B1P51843 470 aaKnown RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 CCZ1BP86790 482 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 CCZ1P86791 482 aaPredicted RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 SEMG2Q02383 582 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 MECOMQ03112 1051 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 MBTD1Q05BQ5 628 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 ZNF415Q09FC8 603 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 CCDC173Q0VFZ6 552 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 IGFBP7Q16270 282 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 ZNF284Q2VY69 593 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 CMPK2Q5EBM0 449 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 PPP6R3Q5H9R7 873 aaPredicted RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 ELFN2Q5R3F8 820 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 PIK3CD-AS1Q5SR53 167 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 LY6G5CQ5SRR4 150 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 ZNF793Q6ZN11 406 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 MMD2Q8IY49 270 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 LRRC56Q8IYG6 542 aaPredicted RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 SLC26A7Q8TE54 656 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 SLC38A5Q8WUX1 472 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 IGFBPL1Q8WX77 278 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 FGF11Q92914 225 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 ULK4Q96C45 1275 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 APOLD1Q96LR9 279 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 TSSK2Q96PF2 358 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 FICDQ9BVA6 458 aa5.32□□□□□ -1.56
VPS53-219ENST00000576019 NUSAP1Q9BXS6 441 aaKnown RBP5.32□□□□□ -1.56
VPS53-219ENST00000576019 FTHL17Q9BXU8 183 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms