RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 IST1P53990 364 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 FOLH1Q04609 750 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 KRTAP21-3Q3LHN1 58 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 ISCA2Q86U28 154 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 DND1Q8IYX4 353 aaKnown RBP19.41■□□□□ 0.7
VPS53-216ENST00000574029 LRRC25Q8N386 305 aaPredicted RBP19.41■□□□□ 0.7
VPS53-216ENST00000574029 FBXW8Q8N3Y1 598 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 UBTD2Q8WUN7 234 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 TANKQ92844 425 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 OR51B5Q9H339 312 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 ALG9Q9H6U8 611 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 EXO5Q9H790 373 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 ZFP64Q9NPA5 681 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 SAYSD1Q9NPB0 183 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 ACKR4Q9NPB9 350 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 RYDENQ9NUL5 291 aaKnown RBP19.41■□□□□ 0.7
VPS53-216ENST00000574029 ADGRE2Q9UHX3 823 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 BOKQ9UMX3 212 aaPredicted RBP19.41■□□□□ 0.7
VPS53-216ENST00000574029 PCDHGB3Q9Y5G1 929 aa19.41■□□□□ 0.7
VPS53-216ENST00000574029 LRRC3CA6NJW4 275 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 K7EPI3 171 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 EIF3HO15372 352 aaKnown RBP eCLIP19.4■□□□□ 0.77e-7■□□□□ 9.9
VPS53-216ENST00000574029 CTAG2O75638 210 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 PLIN5Q00G26 463 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 TNFRSF17Q02223 184 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 DLG1Q12959 904 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 PRAMEF20Q5VT98 475 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 GRHL2Q6ISB3 625 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 ARSKQ6UWY0 536 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 GPR180Q86V85 440 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 ZCCHC7Q8N3Z6 543 aaKnown RBP19.4■□□□□ 0.7
VPS53-216ENST00000574029 NINJ1Q92982 152 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 ATOH8Q96SQ7 321 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 CXXC4Q9H2H0 198 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 PRM3Q9NNZ6 103 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.4■□□□□ 0.71e-7■□□□□ 10.9
VPS53-216ENST00000574029 QPCTLQ9NXS2 382 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 DNAJB12Q9NXW2 375 aaKnown RBP19.4■□□□□ 0.7
VPS53-216ENST00000574029 ALKBH4Q9NXW9 302 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 CNIH4Q9P003 139 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 OPTCQ9UBM4 332 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 B4GALT7Q9UBV7 327 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 PHF11Q9UIL8 331 aa19.4■□□□□ 0.7
VPS53-216ENST00000574029 CHCHD2Q9Y6H1 151 aaPredicted RBP19.4■□□□□ 0.7
VPS53-216ENST00000574029 FBXO45P0C2W1 286 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 ALOX15P16050 662 aaPredicted RBP19.39■□□□□ 0.69
VPS53-216ENST00000574029 ARFIP1P53367 373 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 HNRNPH2P55795 449 aaKnown RBP19.39■□□□□ 0.69
VPS53-216ENST00000574029 KCNJ2P63252 427 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 SPRED3Q2MJR0 410 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 GRTP1Q5TC63 336 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 C18orf63Q68DL7 685 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 ST13P4Q8IZP2 240 aaPredicted RBP19.39■□□□□ 0.69
VPS53-216ENST00000574029 RNF175Q8N4F7 328 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 HUS1BQ8NHY5 278 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 RGMAQ96B86 450 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 FOXC2Q99958 501 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 TMUB1Q9BVT8 246 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 WHRNQ9P202 907 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 TSC22D4Q9Y3Q8 395 aa19.39■□□□□ 0.69
VPS53-216ENST00000574029 UBXN8O00124 270 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 PLPP1O14494 284 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 KERAO60938 352 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 GSTA2P09210 222 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 SLC35E2BP0CK96 405 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 TLX1P31314 330 aaPredicted RBP19.38■□□□□ 0.69
VPS53-216ENST00000574029 SPRP35270 261 aaPredicted RBP19.38■□□□□ 0.69
VPS53-216ENST00000574029 PIK3CBP42338 1070 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 RAP1GDS1P52306 607 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 C3orf62Q6ZUJ4 267 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 SEM1Q6ZVN7 128 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 WDR53Q7Z5U6 358 aaPredicted RBP19.38■□□□□ 0.69
VPS53-216ENST00000574029 OR10G3Q8NGC4 313 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 NEIL3Q8TAT5 605 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 PELOQ9BRX2 385 aaKnown RBP19.38■□□□□ 0.69
VPS53-216ENST00000574029 SETD2Q9BYW2 2564 aaPredicted RBP19.38■□□□□ 0.69
VPS53-216ENST00000574029 NMRAL1Q9HBL8 299 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 DMRT3Q9NQL9 472 aa19.38■□□□□ 0.69
VPS53-216ENST00000574029 CNOT11Q9UKZ1 510 aaKnown RBP19.38■□□□□ 0.69
VPS53-216ENST00000574029 IQANK1A0A1B0GTG1 560 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 FAM221AA4D161 298 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 HSPB2A8KAH6 182 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SUPT3HB4E1H0 165 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SYT5O00445 386 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 PROM1O43490 865 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SUPT3HO75486 399 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 PRKRAO75569 313 aaKnown RBP19.37■□□□□ 0.69
VPS53-216ENST00000574029 EPB42P16452 691 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SERPINB3P29508 390 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 GPX6P59796 221 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 HERVK_113P63132 956 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ERVK-8P63133 956 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 MRPS25P82663 173 aaKnown RBP19.37■□□□□ 0.69
VPS53-216ENST00000574029 CALCOCO2Q13137 446 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 DDX39BQ13838 428 aaKnown RBP19.37■□□□□ 0.69
VPS53-216ENST00000574029 HSPB2Q16082 182 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 SLC29A4Q7RTT9 530 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 CMC1Q7Z7K0 106 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ZZZ3Q8IYH5 903 aa19.37■□□□□ 0.69
VPS53-216ENST00000574029 ULK2Q8IYT8 1036 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms