RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CPNE9Q8IYJ1 553 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 OR56A3Q8NH54 315 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 CD200R1Q8TD46 325 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 SLC5A11Q8WWX8 675 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 NEIL2Q969S2 332 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 STARD4Q96DR4 205 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 MFSD3Q96ES6 412 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 GNRHR2Q96P88 292 aa16.41■□□□□ 0.22
CLK3-227ENST00000570296 MYOCOSA0A1B0GUC4 107 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 BTNL10A8MVZ5 291 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 GPRIN2O60269 458 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 IGKV3-11P04433 115 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 PTMAP06454 111 aaKnown RBP16.4■□□□□ 0.22
CLK3-227ENST00000570296 SRD5A1P18405 259 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 STIP1P31948 543 aaKnown RBP16.4■□□□□ 0.22
CLK3-227ENST00000570296 MSH2P43246 934 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 MASP1P48740 699 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 PLXDC2Q6UX71 529 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 SPNS2Q8IVW8 549 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 C7orf57Q8NEG2 295 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 PYCR2Q96C36 320 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 RILPQ96NA2 401 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 CSF3RQ99062 836 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 AIF1LQ9BQI0 150 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 TMEM204Q9BSN7 226 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 KIFC1Q9BW19 673 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 CCDC68Q9H2F9 335 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 PELI2Q9HAT8 420 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 BFARQ9NZS9 450 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 MAPRE3Q9UPY8 281 aa16.4■□□□□ 0.22
CLK3-227ENST00000570296 FRG2CA6NGY1 282 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 TP53I11O14683 189 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 KLF4O43474 513 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 ADAM11O75078 769 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 THBS1P07996 1170 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 COX7A2P14406 83 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 CFPP27918 469 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 SLC6A12P48065 614 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 NPY2RP49146 381 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 LIM2P55344 173 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 DHX9Q08211 1270 aaKnown RBP16.39■□□□□ 0.21
CLK3-227ENST00000570296 TMEM249Q2WGJ8 235 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 ENPP6Q6UWR7 440 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 PALM2Q8IXS6 379 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 SENP5Q96HI0 755 aaPredicted RBP16.39■□□□□ 0.21
CLK3-227ENST00000570296 GPR21Q99679 349 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 G6PC3Q9BUM1 346 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 ADAM19Q9H013 955 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 RAB6BQ9NRW1 208 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 DAPP1Q9UN19 280 aa16.39■□□□□ 0.21
CLK3-227ENST00000570296 MALRD1Q5VYJ5 2156 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 A0A0G2JN53 185 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 AP3B1O00203 1094 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 ERI3O43414 337 aaKnown RBP16.38■□□□□ 0.21
CLK3-227ENST00000570296 PLAUP00749 431 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 HIST1H2AGP0C0S8 130 aaPredicted RBP16.38■□□□□ 0.21
CLK3-227ENST00000570296 HIST1H2ADP20671 130 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 CASP9P55211 416 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 RBBP5Q15291 538 aaKnown RBP16.38■□□□□ 0.21
CLK3-227ENST00000570296 RPS6KA2Q15349 733 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 ZNF549Q6P9A3 640 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 C22orf34Q6ZV56 151 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 MEX3DQ86XN8 651 aaKnown RBP16.38■□□□□ 0.21
CLK3-227ENST00000570296 GRAMD2AQ8IUY3 354 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 KLHDC8AQ8IYD2 350 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 FAM83FQ8NEG4 500 aaPredicted RBP16.38■□□□□ 0.21
CLK3-227ENST00000570296 ALG3Q92685 438 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 GTPBP3Q969Y2 492 aaKnown RBP16.38■□□□□ 0.21
CLK3-227ENST00000570296 MS4A6EQ96DS6 147 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 PGM2Q96G03 612 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 HIST1H2AHQ96KK5 128 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 HIST1H2AJQ99878 128 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 H2AFJQ9BTM1 129 aa16.38■□□□□ 0.21
CLK3-227ENST00000570296 ESRP2Q9H6T0 727 aaKnown RBP16.38■□□□□ 0.21
CLK3-227ENST00000570296 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLK3-227ENST00000570296 PRR14LQ5THK1 2151 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 EXPH5Q8NEV8 1989 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 IGHV4-39P01824 125 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 PPP3CBP16298 524 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 PTPN6P29350 595 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 HNRNPH1P31943 449 aaKnown RBP16.37■□□□□ 0.21
CLK3-227ENST00000570296 KCNJ5P48544 419 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 TPM4P67936 248 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 VLDLRP98155 873 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 SRYQ05066 204 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 KLF1Q13351 362 aaPredicted RBP16.37■□□□□ 0.21
CLK3-227ENST00000570296 BICRALQ6AI39 1079 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 OR2A2Q6IF42 318 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 NEPROQ6NW34 567 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 CASC4Q6P4E1 433 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 VWA1Q6PCB0 445 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 CES3Q6UWW8 571 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 C12orf54Q6X4T0 127 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 KIAA1328Q86T90 577 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 YRDCQ86U90 279 aaKnown RBP16.37■□□□□ 0.21
CLK3-227ENST00000570296 CNEP1R1Q8N9A8 125 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 ATL1Q8WXF7 558 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 AKAP1Q92667 903 aaKnown RBP eCLIP16.37■□□□□ 0.21
CLK3-227ENST00000570296 TMEM41AQ96HV5 264 aa16.37■□□□□ 0.21
CLK3-227ENST00000570296 SERINC2Q96SA4 455 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms