RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 GLOD5A6NK44 160 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 GABRR3A8MPY1 467 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 TMEM114B3SHH9 223 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 ZFAND5O76080 213 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 WDPCPO95876 746 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 CHRNGP07510 517 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 SLC35E2P0CK97 266 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 DRD2P14416 443 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 PRPH2P23942 346 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 GRK2P25098 689 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 GALNSP34059 522 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 ALDH9A1P49189 494 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 TNFSF10P50591 281 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 BTKQ06187 659 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 HEPACAMQ14CZ8 416 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 ARL13AQ5H913 290 aaPredicted RBP12.11□□□□□ -0.47
CLK3-224ENST00000568605 SH2D4BQ5SQS7 431 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 SCIMPQ6UWF3 145 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 HSDL2Q6YN16 418 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 OR4N5Q8IXE1 308 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 DDIASQ8IXT1 998 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 SAMD14Q8IZD0 417 aaPredicted RBP12.11□□□□□ -0.47
CLK3-224ENST00000568605 CLYBLQ8N0X4 340 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 GOLGA6L1Q8N7Z2 621 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 OR8K3Q8NH51 312 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 CPT1CQ8TCG5 803 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 TWIST2Q8WVJ9 160 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 FBXL20Q96IG2 436 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 C5orf34Q96MH7 638 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 CNPPD1Q9BV87 410 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 RYDENQ9NUL5 291 aaKnown RBP12.11□□□□□ -0.47
CLK3-224ENST00000568605 SIRT5Q9NXA8 310 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 NKIRAS1Q9NYS0 192 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 LUZP4Q9P127 313 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 MAP10Q9P2G4 905 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 PCDHGA10Q9Y5H3 936 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 ZNF780BQ9Y6R6 833 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 ESPL1Q14674 2120 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 NBASA2RRP1 2371 aa12.11□□□□□ -0.47
CLK3-224ENST00000568605 GCN1Q92616 2671 aaKnown RBP12.1□□□□□ -0.47
CLK3-224ENST00000568605 TMEM120BA0PK00 339 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 NPIPB8E9PQR5 432 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 SERPINE1P05121 402 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 FGF4P08620 206 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 IL3P08700 152 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 ANXA4P09525 319 aaPredicted RBP12.1□□□□□ -0.47
CLK3-224ENST00000568605 CD46P15529 392 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 CHN1P15882 459 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 SERPINB3P29508 390 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 OC90Q02509 493 aaPredicted RBP12.1□□□□□ -0.47
CLK3-224ENST00000568605 NR6A1Q15406 480 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 CHI3L2Q15782 390 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 COLEC12Q5KU26 742 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 FCRLBQ6BAA4 426 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 SLC48A1Q6P1K1 146 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 FAM180AQ6UWF9 173 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 SLC29A4Q7RTT9 530 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 GALNT12Q8IXK2 581 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 ARMC10Q8N2F6 343 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 Q8NA96 180 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 TMEM178AQ8NBL3 297 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 FAM98AQ8NCA5 519 aaKnown RBP12.1□□□□□ -0.47
CLK3-224ENST00000568605 OR5L2Q8NGL0 311 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 CDC26Q8NHZ8 85 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 AGR3Q8TD06 166 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 PTPMT1Q8WUK0 201 aaPredicted RBP12.1□□□□□ -0.47
CLK3-224ENST00000568605 RIT1Q92963 219 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 APIPQ96GX9 242 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 CCT7Q99832 543 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 EBPLQ9BY08 206 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 TRIM4Q9C037 500 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 CDCP1Q9H5V8 836 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 TMBIM4Q9HC24 238 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 MIEF1Q9NQG6 463 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 AGPAT4Q9NRZ5 378 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 C1orf109Q9NX04 203 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 ENTPD4Q9Y227 616 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 WBP11Q9Y2W2 641 aaKnown RBP12.1□□□□□ -0.47
CLK3-224ENST00000568605 CSAG2Q9Y5P2 127 aa12.1□□□□□ -0.47
CLK3-224ENST00000568605 WDR91A4D1P6 747 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 SEC22BO75396 215 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 ERAL1O75616 437 aaKnown RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 DHRS4L1P0CG22 281 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 CPMP14384 443 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 PORP16435 677 aaPredicted RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 CSNK2A2P19784 350 aaPredicted RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 MAPK1P28482 360 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 CYB561P49447 251 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 GPR143P51810 404 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 SLC18A1P54219 525 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 MLLT10P55197 1068 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 MLF1P58340 268 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 MAGOHP61326 146 aaKnown RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 ERVK-8P63133 956 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 PLEKHN1Q494U1 663 aaPredicted RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 AGBL2Q5U5Z8 902 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 RPUSD3Q6P087 351 aaKnown RBP12.09□□□□□ -0.47
CLK3-224ENST00000568605 RNF111Q6ZNA4 994 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 IKBIPQ70UQ0 350 aa12.09□□□□□ -0.47
CLK3-224ENST00000568605 HDXQ7Z353 690 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms