RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 OR4N5Q8IXE1 308 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 GPALPP1Q8IXQ4 340 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 SRRM1Q8IYB3 904 aaKnown RBP12.47□□□□□ -0.41
CLK3-213ENST00000563842 FAM26EQ8N5C1 309 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 BANPQ8N9N5 519 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 MDS2Q8NDY4 140 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 SLC2A12Q8TD20 617 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 AGAP11Q8TF27 550 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 TRMOQ9BU70 441 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 FAIM2Q9BWQ8 316 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 TRIM45Q9H8W5 580 aaPredicted RBP12.47□□□□□ -0.41
CLK3-213ENST00000563842 NTNG1Q9Y2I2 539 aa12.47□□□□□ -0.41
CLK3-213ENST00000563842 DIDO1Q9BTC0 2240 aaKnown RBP12.47□□□□□ -0.41
CLK3-213ENST00000563842 MYOCOSA0A1B0GUC4 107 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 TRIM13O60858 407 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 ITGA10O75578 1167 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 CBX6O95503 412 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 DDAH2O95865 285 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 SP1P08047 785 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 SLC35E2P0CK97 266 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 DEKP35659 375 aaKnown RBP12.46□□□□□ -0.41
CLK3-213ENST00000563842 GSTM5P46439 218 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 SSR4P51571 173 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 ACSM2AQ08AH3 577 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 TBL3Q12788 808 aaKnown RBP12.46□□□□□ -0.41
CLK3-213ENST00000563842 UBAP2LQ14157 1087 aaKnown RBP12.46□□□□□ -0.41
CLK3-213ENST00000563842 IMPG1Q17R60 797 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 NDUFAF5Q5TEU4 345 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 C6orf163Q5TEZ5 329 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 ACSM2BQ68CK6 577 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 SPINK14Q6IE38 97 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 SLC25A25Q6KCM7 469 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 OR4K14Q8NGD5 310 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 THAP3Q8WTV1 239 aaPredicted RBP12.46□□□□□ -0.41
CLK3-213ENST00000563842 CHTF18Q8WVB6 975 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 SCMH1Q96GD3 660 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 SENP5Q96HI0 755 aaPredicted RBP12.46□□□□□ -0.41
CLK3-213ENST00000563842 SIGLEC12Q96PQ1 595 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 TEX10Q9NXF1 929 aaPredicted RBP12.46□□□□□ -0.41
CLK3-213ENST00000563842 ANKRD10Q9NXR5 420 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 MCM8Q9UJA3 840 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 ZNF223Q9UK11 482 aaPredicted RBP12.46□□□□□ -0.41
CLK3-213ENST00000563842 FLNCQ14315 2725 aa12.46□□□□□ -0.41
CLK3-213ENST00000563842 GOLGA6L10A6NI86 522 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 GLOD5A6NK44 160 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 MAN1A2O60476 641 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 PRKRAO75569 313 aaKnown RBP12.45□□□□□ -0.42
CLK3-213ENST00000563842 SLC25A12O75746 678 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 NEURL1O76050 574 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 UQCRFS1P47985 274 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 RNF4P78317 190 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 GALNT1Q10472 559 aaPredicted RBP12.45□□□□□ -0.42
CLK3-213ENST00000563842 MAPKAPK3Q16644 382 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 SPRED3Q2MJR0 410 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 KRT71Q3SY84 523 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 TCHHL1Q5QJ38 904 aaPredicted RBP12.45□□□□□ -0.42
CLK3-213ENST00000563842 C10orf107Q8IVU9 208 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 CYP4Z2PQ8N1L4 340 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 C1orf52Q8N6N3 182 aaKnown RBP12.45□□□□□ -0.42
CLK3-213ENST00000563842 PRR7Q8TB68 274 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 ZNF721Q8TF20 911 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 ASB15Q8WXK1 588 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 NR4A3Q92570 626 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 RIT1Q92963 219 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 PPWD1Q96BP3 646 aaKnown RBP12.45□□□□□ -0.42
CLK3-213ENST00000563842 FBXL20Q96IG2 436 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 HBEGFQ99075 208 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 ACPTQ9BZG2 426 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 RRAGDQ9NQL2 400 aaPredicted RBP12.45□□□□□ -0.42
CLK3-213ENST00000563842 KLHL1Q9NR64 748 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 MYOTQ9UBF9 498 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 KLF13Q9Y2Y9 288 aaPredicted RBP12.45□□□□□ -0.42
CLK3-213ENST00000563842 TIMM22Q9Y584 194 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 PCDHA9Q9Y5H5 950 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 PTPN13Q12923 2485 aa12.45□□□□□ -0.42
CLK3-213ENST00000563842 MYO7BQ6PIF6 2116 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 NINQ8N4C6 2090 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 GNG14A0A1W2PPG7 69 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 OR6C76A6NM76 312 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 A8MVJ9 347 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 KLRC4-KLRK1H3BQV0 150 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 UBFD1O14562 309 aaKnown RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 PGRMC2O15173 223 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 RGS16O15492 202 aaPredicted RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 CHEK2O96017 543 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 UROSP10746 265 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 PORP16435 677 aaPredicted RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 XKP51811 444 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 HK2P52789 917 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 MRPL49Q13405 166 aaKnown RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 ZNF267Q14586 743 aaPredicted RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 PCLAFQ15004 111 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 MPEG1Q2M385 716 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 EIF2S3LQ2VIR3 472 aaKnown RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 SPDYAQ5MJ70 313 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 ZNF324BQ6AW86 544 aaPredicted RBP12.44□□□□□ -0.42
CLK3-213ENST00000563842 SLC48A1Q6P1K1 146 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 OPN5Q6U736 354 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 RNF111Q6ZNA4 994 aa12.44□□□□□ -0.42
CLK3-213ENST00000563842 SLC29A4Q7RTT9 530 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms