RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 BUD31P41223 144 aaPredicted RBP15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 MAGEA12P43365 314 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 SERPINB8P50452 374 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 NR0B1P51843 470 aaKnown RBP15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 RPS13P62277 151 aaKnown RBP15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 SLC7A5Q01650 507 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 PLGLB1Q02325 96 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 FOLH1Q04609 750 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 TBL3Q12788 808 aaKnown RBP15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 DDX39BQ13838 428 aaKnown RBP15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 GTF2H2Q13888 395 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 C18orf63Q68DL7 685 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 C8orf74Q6P047 294 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 GTF2H2CQ6P1K8 395 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 KLC3Q6P597 504 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 DGAT2L6Q6ZPD8 337 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 CEP128Q6ZU80 1094 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 GOLGA7Q7Z5G4 137 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 C9orf40Q8IXQ3 194 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 FAM109AQ8N4B1 249 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 LILRB4Q8NHJ6 448 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 IPPKQ9H8X2 491 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 NINJ2Q9NZG7 142 aa15.91■□□□□ 0.14
VPS9D1-203ENST00000563798 LRRC14BA6NHZ5 514 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 BCKDKO14874 412 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 TMPRSS11DO60235 418 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 EEDO75530 441 aaKnown RBP15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 PDE9AO76083 593 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 SEMA3DO95025 777 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 CCL3P10147 92 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 IGFBP2P18065 325 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 CHRNB4P30926 498 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 ASPHQ12797 758 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 GXYLT1Q4G148 440 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 TECRLQ5HYJ1 363 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 C10orf62Q5T681 223 aaPredicted RBP15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 ADGRD1Q6QNK2 874 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 ACAD11Q709F0 780 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 TRILQ7L0X0 811 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 MYLK4Q86YV6 388 aaPredicted RBP15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 TMEM251Q8N6I4 163 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 SLC22A8Q8TCC7 542 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 PAQR8Q8TEZ7 354 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 RND1Q92730 232 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 PPWD1Q96BP3 646 aaKnown RBP15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 TMCO1Q9UM00 188 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 RNF11Q9Y3C5 154 aa15.9■□□□□ 0.14
VPS9D1-203ENST00000563798 TACC2O95359 2948 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 CSMD2Q7Z408 3487 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 A0A1W2PR48 441 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 OR6C76A6NM76 312 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 FAM166BA8MTA8 275 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 STX16-NPEPL1H3BU86 382 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 HRKO00198 91 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 AQP7O14520 342 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 STX16O14662 325 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 SUSD5O60279 629 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 SIX3O95343 332 aaPredicted RBP15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 CLDN9O95484 217 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 P04436 131 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 FAM58BPP0C7Q3 252 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 CAPN3P20807 821 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 TFF3Q07654 80 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 CPSF6Q16630 551 aaKnown RBP eCLIP15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 SLC22A10Q63ZE4 541 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 FAM47EQ6ZV65 393 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 SLC44A1Q8WWI5 657 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 SPACA9Q96E40 222 aaPredicted RBP15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 NTMT1Q9BV86 223 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 TSPYL1Q9H0U9 437 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 TUBA8Q9NY65 449 aaPredicted RBP15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 RNF6Q9Y252 685 aa15.89■□□□□ 0.13
VPS9D1-203ENST00000563798 G3V3Y1 287 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 OR7A17O14581 309 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 RBP1P09455 135 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 FBXO45P0C2W1 286 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 SLC35E2P0CK97 266 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 NR2F6P10588 404 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 MAGEA5P43359 124 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 DNASE1L1P49184 302 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 SLC37A1P57057 533 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 NUDT13Q86X67 352 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 PLD6Q8N2A8 252 aaKnown RBP15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 RPRMLQ8N4K4 120 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 SREK1Q8WXA9 508 aaKnown RBP15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 MRRFQ96E11 262 aaKnown RBP15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 SMC6Q96SB8 1091 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 SERPINI1Q99574 410 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 PRM3Q9NNZ6 103 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 CNIH4Q9P003 139 aa15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 CPSF2Q9P2I0 782 aaKnown RBP15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 TEP1Q99973 2627 aaKnown RBP15.88■□□□□ 0.13
VPS9D1-203ENST00000563798 ZNF407Q9C0G0 2248 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 IQANK1A0A1B0GTG1 560 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 FIGNL2A6NMB9 653 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 WASHC1A8K0Z3 465 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 NPIPA2E9PIF3 369 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 NPIPA3F8WFD2 350 aa15.87■□□□□ 0.13
VPS9D1-203ENST00000563798 HCN1O60741 890 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms