RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 WLSQ5T9L3 541 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 LIPKQ5VXJ0 399 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 PLEKHA7Q6IQ23 1121 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF474Q6S9Z5 364 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 Q6ZWC4 215 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TMPRSS11FQ6ZWK6 438 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CCDC25Q86WR0 208 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 PAQR4Q8N4S7 273 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM199Q8N511 208 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF565Q8N9K5 539 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 B3GALNT2Q8NCR0 500 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF397Q8NF99 534 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 OR52N4Q8NGI2 321 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM81AQ8TBF8 368 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 PROKR1Q8TCW9 393 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 RFT1Q96AA3 541 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 DACT3Q96B18 629 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 HAVCR1Q96D42 359 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 RNF183Q96D59 192 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 MARK4Q96L34 752 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF570Q96NI8 536 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 MTMR9Q96QG7 549 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 MTERF1Q99551 399 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 CHRDL1Q9BU40 450 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TRMT61BQ9BVS5 477 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 BLZF1Q9H2G9 400 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 KCNN2Q9H2S1 579 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 MAGIXQ9H6Y5 334 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM185BQ9H7F4 350 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 GEMIN7Q9H840 131 aaKnown RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 SEBOXQ9HB31 216 aaPredicted RBP4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 TMEM165Q9HC07 324 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF302Q9NR11 478 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 RNF24Q9Y225 148 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 UBIAD1Q9Y5Z9 338 aa4.86□□□□□ -1.63
VPS35P1-201ENST00000563400 PHIPQ8WWQ0 1821 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 LOC285556D6RIA3 1793 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 MEX3AA1L020 520 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 A6NNC1 897 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 TARM1B6A8C7 271 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 MSI1O43347 362 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 NFATC1O95644 943 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 SNAI1O95863 264 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 GOT2P00505 430 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 IGHV2-70P01814 119 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 IGFBP1P08833 259 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 STAG3L2P0CL84 134 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 TFPIP10646 304 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PRKACAP17612 351 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ACO1P21399 889 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 EIF2S3P41091 472 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PPP1R2P41236 205 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 CCR4P51679 360 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 TPTEP56180 551 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 SEC61GP60059 68 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 CXADRP78310 365 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 VEZF1Q14119 521 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ELAVL3Q14576 367 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 NR1D2Q14995 579 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM83EQ2M2I3 478 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 EXOC3L2Q2M3D2 409 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 HNRNPA1L2Q32P51 320 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF829Q3KNS6 432 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 RNASE12Q5GAN4 147 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF311Q5JNZ3 666 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 IL23RQ5VWK5 629 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ZDHHC20Q5W0Z9 365 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF770Q6IQ21 691 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PLXDC2Q6UX71 529 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 TPRG1Q6ZUI0 275 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 C16orf62Q7Z3J2 963 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ARHGAP22Q7Z5H3 698 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 SPRED1Q7Z699 444 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 LHFPL4Q7Z7J7 247 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 CHSY1Q86X52 802 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 TDHQ8IZJ6 230 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 SPATA6LQ8N4H0 392 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ANKFN1Q8N957 763 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 MCPH1Q8NEM0 835 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 TRMT10AQ8TBZ6 339 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF596Q8TC21 504 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ADAMTS17Q8TE56 1095 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 GRHL3Q8TE85 626 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PDCD6IPQ8WUM4 868 aaKnown RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ADAMTS14Q8WXS8 1223 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PROX1Q92786 737 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 P2RX5Q93086 422 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 MCUR1Q96AQ8 359 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 FKBP10Q96AY3 582 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 FAM71F1Q96KD3 344 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF48Q96MX3 618 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 ZNF582Q96NG8 517 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 GATA5Q9BWX5 397 aaPredicted RBP4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 STRADBQ9C0K7 418 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PPP1R3EQ9H7J1 279 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 AUNIPQ9H7T9 357 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PARD6AQ9NPB6 346 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 PDGFCQ9NRA1 345 aa4.85□□□□□ -1.63
VPS35P1-201ENST00000563400 GPR173Q9NS66 373 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms