RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 CTAGE4Q8IX94 777 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 OR2M7Q8NG81 312 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 OR5L2Q8NGL0 311 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 DOK4Q8TEW6 326 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 UCN3Q969E3 161 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 ATP6V1E2Q96A05 226 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 SCYL1Q96KG9 808 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 NSUN5Q96P11 429 aaKnown RBP9.53□□□□□ -0.88
CLK3-205ENST00000561673 NTMT1Q9BV86 223 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 ZBTB26Q9HCK0 441 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 XPR1Q9UBH6 696 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 COPS7AQ9UBW8 275 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 PHF11Q9UIL8 331 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 ZNF180Q9UJW8 692 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 PCTPQ9UKL6 214 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 HRH3Q9Y5N1 445 aa9.53□□□□□ -0.88
CLK3-205ENST00000561673 AKAP9Q99996 3911 aa9.52□□□□□ -0.88
CLK3-205ENST00000561673 A0A087WUV0 522 aaPredicted RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 TRIM49D1C9J1S8 452 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 E9PLN8 166 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 G3V3Y1 287 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 STX16-NPEPL1H3BU86 382 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 STX16O14662 325 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 PGRMC2O15173 223 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 DYRK3O43781 588 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 SMIM24O75264 130 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 GBAP04062 536 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 COL6A2P12110 1019 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 ALOX15P16050 662 aaPredicted RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 CNR1P21554 472 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 CNTFP26441 200 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 PTGS2P35354 604 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 ARL1P40616 181 aaPredicted RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 BUD31P41223 144 aaPredicted RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 PPIAP62937 165 aaKnown RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 PLIN5Q00G26 463 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 ASPHQ12797 758 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 MPEG1Q2M385 716 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 TSNAXIP1Q2TAA8 658 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 CYP20A1Q6UW02 462 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 RTL4Q6ZR62 310 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 RPS27LQ71UM5 84 aaKnown RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 TAOK1Q7L7X3 1001 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 C9orf40Q8IXQ3 194 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 ST13P4Q8IZP2 240 aaPredicted RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 TMEM151AQ8N4L1 468 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 SGCZQ96LD1 299 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 VKORC1Q9BQB6 163 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 MRPL57Q9BQC6 102 aaKnown RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 DEFB127Q9H1M4 99 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 CHST11Q9NPF2 352 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 PLSCR2Q9NRY7 297 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 LYARQ9NX58 379 aaKnown RBP9.52□□□□□ -0.89
CLK3-205ENST00000561673 TMCO1Q9UM00 188 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 PPT2Q9UMR5 302 aa9.52□□□□□ -0.89
CLK3-205ENST00000561673 CACNA1DQ01668 2161 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 A0A1B0GTL3 188 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 FAM166BA8MTA8 275 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 PPP6CO00743 305 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 OR10H2O60403 315 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 GLSO94925 669 aaPredicted RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 AIFM1O95831 613 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 KLK1P06870 262 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 SNRPAP09012 282 aaKnown RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 SBK3P0C264 359 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 NR2F6P10588 404 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 GCAP28676 217 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 HERVK_113P63132 956 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 ERVK-8P63133 956 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 PLGLB1Q02325 96 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 TRAF3Q13114 568 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 ZNF267Q14586 743 aaPredicted RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 ZNF791Q3KP31 576 aaPredicted RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 FRG2Q64ET8 278 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 TTC19Q6DKK2 380 aaPredicted RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 OPN5Q6U736 354 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 MILR1Q7Z6M3 343 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 CD163Q86VB7 1156 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 MCEMP1Q8IX19 187 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 SRRM1Q8IYB3 904 aaKnown RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 GOLM1Q8NBJ4 401 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 OR4F6Q8NGB9 312 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 NUBPLQ8TB37 319 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 FAM57AQ8TBR7 257 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 RIT1Q92963 219 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 FBXL20Q96IG2 436 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 FRG2BQ96QU4 278 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 DMRTA2Q96SC8 542 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 SERPINI1Q99574 410 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 FAM173AQ9BQD7 235 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 CNPPD1Q9BV87 410 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 ERVK-6Q9BXR3 956 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 TTTY12Q9BZ98 90 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 MRPL46Q9H2W6 279 aaKnown RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 ZDHHC11Q9H8X9 412 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 SH2D2AQ9NP31 389 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 SEMA4BQ9NPR2 832 aaPredicted RBP9.51□□□□□ -0.89
CLK3-205ENST00000561673 NFU1Q9UMS0 254 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 ERVK-19Q9WJR5 959 aa9.51□□□□□ -0.89
CLK3-205ENST00000561673 IQANK1A0A1B0GTG1 560 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms