RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 RGS14O43566 566 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 PCDH7O60245 1069 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 PRAMEF2O60811 474 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 VPS4BO75351 444 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 RSL1D1O76021 490 aaKnown RBP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 ZWINTO95229 277 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 F10P00742 488 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 FGF4P08620 206 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 SLC35E2P0CK97 266 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 SERPINB3P29508 390 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 TIA1P31483 386 aaKnown RBP eCLIP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 ETV4P43268 484 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 HMGCS1Q01581 520 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 OC90Q02509 493 aaPredicted RBP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 BTKQ06187 659 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 TUBA3CQ13748 450 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 SPRED3Q2MJR0 410 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 C6orf163Q5TEZ5 329 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 TUBA3EQ6PEY2 450 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 SCIMPQ6UWF3 145 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 RNF165Q6ZSG1 346 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 NUDCD3Q8IVD9 361 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 CISD2Q8N5K1 135 aaKnown RBP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 OR5L2Q8NGL0 311 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 RIT1Q92963 219 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 SNRNP40Q96DI7 357 aaKnown RBP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 APIPQ96GX9 242 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 SHCBP1LQ9BZQ2 653 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 AGPAT4Q9NRZ5 378 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 RYDENQ9NUL5 291 aaKnown RBP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 ARGLU1Q9NWB6 273 aaPredicted RBP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 ZNF223Q9UK11 482 aaPredicted RBP11.63□□□□□ -0.55
SLIRP-209ENST00000557342 VPS4AQ9UN37 437 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 PCDHGB6Q9Y5F9 930 aa11.63□□□□□ -0.55
SLIRP-209ENST00000557342 PGRMC2O15173 223 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 BIRC5O15392 142 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 MAN1A2O60476 641 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 DDAH2O95865 285 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 NEFHP12036 1026 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 DRD2P14416 443 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 CD46P15529 392 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 PRPH2P23942 346 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 TRHRP34981 398 aaPredicted RBP11.62□□□□□ -0.55
SLIRP-209ENST00000557342 CD96P40200 585 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 SERPINB4P48594 390 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 CYB561P49447 251 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 KCNC4Q03721 635 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 HEPACAMQ14CZ8 416 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 OR1C1Q15619 314 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 IGFBP7Q16270 282 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 ARL13AQ5H913 290 aaPredicted RBP11.62□□□□□ -0.55
SLIRP-209ENST00000557342 FAM219BQ5XKK7 198 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 KANK2Q63ZY3 851 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 CLEC6AQ6EIG7 209 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 SLC48A1Q6P1K1 146 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 GALNT18Q6P9A2 607 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 FAM180AQ6UWF9 173 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 CLYBLQ8N0X4 340 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 GALNT11Q8NCW6 608 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 PPP1R14CQ8TAE6 165 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 FAM76AQ8TAV0 307 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 ZNF721Q8TF20 911 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 PPWD1Q96BP3 646 aaKnown RBP11.62□□□□□ -0.55
SLIRP-209ENST00000557342 SENP5Q96HI0 755 aaPredicted RBP11.62□□□□□ -0.55
SLIRP-209ENST00000557342 FBXL20Q96IG2 436 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 C5orf34Q96MH7 638 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 TNFRSF12AQ9NP84 129 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 KCNK9Q9NPC2 374 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 LRFN1Q9P244 771 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 WBP11Q9Y2W2 641 aaKnown RBP11.62□□□□□ -0.55
SLIRP-209ENST00000557342 YARS2Q9Y2Z4 477 aaKnown RBP11.62□□□□□ -0.55
SLIRP-209ENST00000557342 FIS1Q9Y3D6 152 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 ZNF780BQ9Y6R6 833 aa11.62□□□□□ -0.55
SLIRP-209ENST00000557342 WASHC1A8K0Z3 465 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 NPIPB8E9PQR5 432 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 ITGA10O75578 1167 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 SNUPNO95149 360 aaKnown RBP11.61□□□□□ -0.55
SLIRP-209ENST00000557342 CHRNGP07510 517 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 ANXA4P09525 319 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-209ENST00000557342 CPMP14384 443 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 PORP16435 677 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-209ENST00000557342 CSNK2A2P19784 350 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-209ENST00000557342 ALDH9A1P49189 494 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 HLCSP50747 726 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 XKP51811 444 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 RNF4P78317 190 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 RAE1P78406 368 aaKnown RBP11.61□□□□□ -0.55
SLIRP-209ENST00000557342 ZNF763Q0D2J5 394 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 CASP8Q14790 479 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 PRR30Q53SZ7 412 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-209ENST00000557342 ZNF766Q5HY98 468 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 ZCCHC23Q6ZST2 131 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 GPALPP1Q8IXQ4 340 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 SAMD14Q8IZD0 417 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-209ENST00000557342 TMEM156Q8N614 296 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 TMEM178AQ8NBL3 297 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 MDS2Q8NDY4 140 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 NUBPLQ8TB37 319 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 C16orf78Q8WTQ4 265 aa11.61□□□□□ -0.55
SLIRP-209ENST00000557342 THAP3Q8WTV1 239 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms