RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 H3F3CQ6NXT2 135 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 IGFL2Q6UWQ7 119 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 IGFL3Q6UXB1 125 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 TMEM132CQ8N3T6 1108 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 GOLGA6L1Q8N7Z2 621 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 ZNF321PQ8N8H1 164 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 TEX19Q8NA77 164 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 APCDD1LQ8NCL9 501 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 CDC26Q8NHZ8 85 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 C3orf30Q96M34 536 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 DGAT2Q96PD7 388 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 NPAS2Q99743 824 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 FAIM2Q9BWQ8 316 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 LRTM1Q9HBL6 345 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 ZNF446Q9NWS9 450 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 C1orf109Q9NX04 203 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 PLA2G3Q9NZ20 509 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 GIMAP2Q9UG22 337 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 ZNF223Q9UK11 482 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-226ENST00000553011 CES1P1Q9UKY3 287 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 PPIEQ9UNP9 301 aaKnown RBP13.17□□□□□ -0.3
PTCH1-226ENST00000553011 CSAG2Q9Y5P2 127 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 CLCA3PQ9Y6N3 262 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 EML6Q6ZMW3 1958 aa13.17□□□□□ -0.3
PTCH1-226ENST00000553011 SHANK1Q9Y566 2161 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 TRBV11-1A0A0K0K1C0 115 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 NPIPB8E9PQR5 432 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 LSM1O15116 133 aaKnown RBP13.16□□□□□ -0.3
PTCH1-226ENST00000553011 MAN1A2O60476 641 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 DDAH2O95865 285 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 F10P00742 488 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 JUNP05412 331 aaKnown RBP13.16□□□□□ -0.3
PTCH1-226ENST00000553011 PIK3R1P27986 724 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 ST13P50502 369 aaKnown RBP13.16□□□□□ -0.3
PTCH1-226ENST00000553011 PLIN5Q00G26 463 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 KLRB1Q12918 225 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 GALNTL6Q49A17 601 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 XKR7Q5GH72 579 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 NOXRED1Q6NXP6 359 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 SLC48A1Q6P1K1 146 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 CRLF3Q8IUI8 442 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 ST13P4Q8IZP2 240 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-226ENST00000553011 ZADH2Q8N4Q0 377 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 OR4K14Q8NGD5 310 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 OR14A16Q8NHC5 309 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 SLC2A12Q8TD20 617 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 DAZLQ92904 295 aaKnown RBP13.16□□□□□ -0.3
PTCH1-226ENST00000553011 VMP1Q96GC9 406 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 RBM18Q96H35 190 aaKnown RBP13.16□□□□□ -0.3
PTCH1-226ENST00000553011 LMF1Q96S06 567 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 OR8D2Q9GZM6 311 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 ILKAPQ9H0C8 392 aaPredicted RBP13.16□□□□□ -0.3
PTCH1-226ENST00000553011 EPS8L2Q9H6S3 715 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 LUZP4Q9P127 313 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 RAP2CQ9Y3L5 183 aa13.16□□□□□ -0.3
PTCH1-226ENST00000553011 HELZ2Q9BYK8 2649 aaKnown RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 ATP6AP2A0A1C7CYW4 349 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 HMGB1P1B2RPK0 211 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 B8ZZF3 427 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 HRKO00198 91 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 PRKNO60260 465 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 OR10H2O60403 315 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 ERAL1O75616 437 aaKnown RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 ATP6AP2O75787 350 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 SLC35E2P0CK97 266 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 COX7A2P14406 83 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 TACR1P25103 407 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 CLCN2P51788 898 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 XKP51811 444 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 RPL38P63173 70 aaKnown RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 ZNF763Q0D2J5 394 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 BIKQ13323 160 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 PDCD2Q16342 344 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 ACER2Q5QJU3 275 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 ABHD17BQ5VST6 288 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 SLC6A19Q695T7 634 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 FAM180BQ6P0A1 224 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 HPS6Q86YV9 775 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 HOMEZQ8IX15 550 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 BEST3Q8N1M1 668 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 MORN4Q8NDC4 146 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 FAM76AQ8TAV0 307 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 THAP3Q8WTV1 239 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 TM9SF4Q92544 642 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 KLHL29Q96CT2 875 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 METTL2AQ96IZ6 378 aaKnown RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 DEFB126Q9BYW3 111 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 CDCP1Q9H5V8 836 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 PNPOQ9NVS9 261 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 STMN3Q9NZ72 180 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 HAO1Q9UJM8 370 aa13.15□□□□□ -0.3
PTCH1-226ENST00000553011 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 HEMK1Q9Y5R4 338 aaPredicted RBP13.15□□□□□ -0.3
PTCH1-226ENST00000553011 WDPCPO95876 746 aa13.14□□□□□ -0.31
PTCH1-226ENST00000553011 CPMP14384 443 aa13.14□□□□□ -0.31
PTCH1-226ENST00000553011 DRD2P14416 443 aa13.14□□□□□ -0.31
PTCH1-226ENST00000553011 PTGER1P34995 402 aa13.14□□□□□ -0.31
PTCH1-226ENST00000553011 FEN1P39748 380 aaKnown RBP13.14□□□□□ -0.31
PTCH1-226ENST00000553011 RPL14P50914 215 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms