RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 RPL6Q02878 288 aaKnown RBP15.52■□□□□ 0.08
CUX1-213ENST00000549414 LIMS2Q7Z4I7 341 aa15.52■□□□□ 0.08
CUX1-213ENST00000549414 LGALS12Q96DT0 336 aa15.52■□□□□ 0.08
CUX1-213ENST00000549414 SAMD11Q96NU1 681 aa15.52■□□□□ 0.08
CUX1-213ENST00000549414 PKMYT1Q99640 499 aa15.52■□□□□ 0.08
CUX1-213ENST00000549414 RP1P56715 2156 aa15.52■□□□□ 0.08
CUX1-213ENST00000549414 ELOA3DA6NLF2 546 aaPredicted RBP15.52■□□□□ 0.07
CUX1-213ENST00000549414 IMPA1P29218 277 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 CLCA4Q14CN2 919 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 TRAM2Q15035 370 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 FAM214AQ32MH5 1076 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 ELOA3BQ3SY89 546 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 LIPKQ5VXJ0 399 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 IQCF1Q8N6M8 205 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 ELOA3Q8NG57 546 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 CRELD1Q96HD1 420 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 SH3YL1Q96HL8 342 aaPredicted RBP15.52■□□□□ 0.07
CUX1-213ENST00000549414 OR8D2Q9GZM6 311 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 SLC6A16Q9GZN6 736 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 ELL3Q9HB65 397 aaPredicted RBP15.52■□□□□ 0.07
CUX1-213ENST00000549414 MKKSQ9NPJ1 570 aaPredicted RBP15.52■□□□□ 0.07
CUX1-213ENST00000549414 SLC35C2Q9NQQ7 365 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 LRRC37AA6NMS7 1700 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 KHDRBS3O75525 346 aaKnown RBP15.52■□□□□ 0.07
CUX1-213ENST00000549414 ZNF26P17031 533 aaPredicted RBP15.52■□□□□ 0.07
CUX1-213ENST00000549414 CRISP1P54107 249 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 HBA1P69905 142 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 SLC3A1Q07837 685 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 LHFPL3Q86UP9 236 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 SLC22A16Q86VW1 577 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 OR51G2Q8NGK0 314 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 PPP1R14AQ96A00 147 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 KCTD7Q96MP8 289 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 CA5BQ9Y2D0 317 aa15.52■□□□□ 0.07
CUX1-213ENST00000549414 WNK3Q9BYP7 1800 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 PIM1P11309 404 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 PRLHRP49683 370 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CLCN2P51788 898 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 TMBIM6P55061 237 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CDK3Q00526 305 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 ACVR1Q04771 509 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 ENPP2Q13822 863 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CD300LGQ6UXG3 332 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 USP53Q70EK8 1073 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 WDR53Q7Z5U6 358 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.51■□□□□ 0.07
CUX1-213ENST00000549414 CD180Q99467 661 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 TMEM138Q9NPI0 162 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 HEMK1Q9Y5R4 338 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 B3GALT4O96024 378 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 C1QAP02745 245 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 OC90Q02509 493 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 QSER1Q2KHR3 1735 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 FAM92AA1XBS5 289 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 UGDHO60701 494 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CELP19835 753 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 GABRA3P34903 492 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CNR2P34972 360 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 OMPP47874 163 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 SLC5A12Q1EHB4 618 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 Q6ZPB1 254 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 PIWIL3Q7Z3Z3 882 aaKnown RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 ZSWIM9Q86XI8 627 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CHERPQ8IWX8 916 aaKnown RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 KLHL36Q8N4N3 616 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 FAM86B1Q8N7N1 296 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 OR5M3Q8NGP4 307 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 ARRDC3Q96B67 414 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 MGLLQ99685 303 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 PRRG4Q9BZD6 226 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 PAK1IP1Q9NWT1 392 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 SARDHQ9UL12 918 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 TARM1B6A8C7 271 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 FHP07954 510 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 MRPL3P09001 348 aaKnown RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 RHCEP18577 417 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 ACVR2AP27037 513 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CERS1P27544 350 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 NFATC3Q12968 1075 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 CDK5R2Q13319 367 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 SMN1Q16637 294 aaKnown RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 ZFP41Q8N8Y5 198 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 SCAIQ8N9R8 606 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 ZNF548Q8NEK5 533 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 SMPDL3BQ92485 455 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 TMEM80Q96HE8 168 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 ZNF419Q96HQ0 510 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 HHIPL1Q96JK4 782 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 MVB12BQ9H7P6 319 aa15.51■□□□□ 0.07
CUX1-213ENST00000549414 SPATA6Q9NWH7 488 aaPredicted RBP15.51■□□□□ 0.07
CUX1-213ENST00000549414 J3QLW9 94 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 ZNF19P17023 458 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 FBXO43Q4G163 708 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 OR4K5Q8NGD3 323 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 MMABQ96EY8 250 aaPredicted RBP15.5■□□□□ 0.07
CUX1-213ENST00000549414 P2RY12Q9H244 342 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 COPS7AQ9UBW8 275 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 MED31Q9Y3C7 131 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 ENPP4Q9Y6X5 453 aa15.5■□□□□ 0.07
CUX1-213ENST00000549414 RIF1Q5UIP0 2472 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms