RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 MED27Q6P2C8 311 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 ADGRD1Q6QNK2 874 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 ARSKQ6UWY0 536 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 LIX1LQ8IVB5 337 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 C9orf40Q8IXQ3 194 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 LRRC25Q8N386 305 aaPredicted RBP11.85□□□□□ -0.51
PTCH1-218ENST00000548945 FBXW8Q8N3Y1 598 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 SPATA6LQ8N4H0 392 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 CHDHQ8NE62 594 aaPredicted RBP11.85□□□□□ -0.51
PTCH1-218ENST00000548945 OR7G3Q8NG95 312 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 STAG3L4Q8TBR4 150 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 PYROXD1Q8WU10 500 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 ESAMQ96AP7 390 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 KRT12Q99456 494 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 RBBP8Q99708 897 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 PELOQ9BRX2 385 aaKnown RBP11.85□□□□□ -0.51
PTCH1-218ENST00000548945 TMUB1Q9BVT8 246 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 RPF2Q9H7B2 306 aaKnown RBP11.85□□□□□ -0.51
PTCH1-218ENST00000548945 CAB39LQ9H9S4 337 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 SEMA4BQ9NPR2 832 aaPredicted RBP11.85□□□□□ -0.51
PTCH1-218ENST00000548945 DNAJB12Q9NXW2 375 aaKnown RBP11.85□□□□□ -0.51
PTCH1-218ENST00000548945 PHF11Q9UIL8 331 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 RNF112Q9ULX5 631 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 EDARQ9UNE0 448 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 EXPH5Q8NEV8 1989 aa11.85□□□□□ -0.51
PTCH1-218ENST00000548945 DOCK7Q96N67 2140 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 HSPB2A8KAH6 182 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 RTCAO00442 366 aaKnown RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 SYT5O00445 386 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 EIF3HO15372 352 aaKnown RBP eCLIP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 PHGDHO43175 533 aaKnown RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 NADKO95544 446 aaPredicted RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 FBXO45P0C2W1 286 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 CD99P14209 185 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 ENDOUP21128 410 aaKnown RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 SERPINB3P29508 390 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 PIGAP37287 484 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 GP5P40197 560 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 PIK3CBP42338 1070 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 RAB10P61026 200 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 KCNJ2P63252 427 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 ID2Q02363 134 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 SLAMF1Q13291 335 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 HSPB2Q16082 182 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 SPRED3Q2MJR0 410 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 OR4C11Q6IEV9 310 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 LYPD8Q6UX82 237 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 GPR180Q86V85 440 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 ST13P4Q8IZP2 240 aaPredicted RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 ZCCHC7Q8N3Z6 543 aaKnown RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 NEIL3Q8TAT5 605 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 UBTD2Q8WUN7 234 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 SREK1Q8WXA9 508 aaKnown RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 RGMAQ96B86 450 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 CENPKQ9BS16 269 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 TRIM31Q9BZY9 425 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 EXO5Q9H790 373 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 L2HGDHQ9H9P8 463 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 NUDT4Q9NZJ9 180 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 SPRR3Q9UBC9 169 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 TSC22D4Q9Y3Q8 395 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 SAR1BQ9Y6B6 198 aa11.84□□□□□ -0.51
PTCH1-218ENST00000548945 CHCHD2Q9Y6H1 151 aaPredicted RBP11.84□□□□□ -0.51
PTCH1-218ENST00000548945 ANKRD33BA6NCL7 494 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 LRRC3CA6NJW4 275 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 FAM159BA6NKW6 160 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 OR6C76A6NM76 312 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 CXorf49A8MYA2 514 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-218ENST00000548945 K7EPI3 171 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 PIAS1O75925 651 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 TGFB1P01137 390 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 GSTA2P09210 222 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 RFPL3SP0C7P2 107 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 PCNAP12004 261 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 ALOX15P16050 662 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-218ENST00000548945 GALNSP34059 522 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 BUD31P41223 144 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-218ENST00000548945 KIR2DL3P43628 341 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 RPL21P46778 160 aaKnown RBP11.83□□□□□ -0.52
PTCH1-218ENST00000548945 TNFRSF17Q02223 184 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 WHAMMP3Q1A5X7 153 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 FBXL19-AS1Q494R0 122 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 TBCELQ5QJ74 424 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 GRHL2Q6ISB3 625 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 SLC29A4Q7RTT9 530 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 WDR53Q7Z5U6 358 aaPredicted RBP11.83□□□□□ -0.52
PTCH1-218ENST00000548945 ULK2Q8IYT8 1036 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 LRRC46Q96FV0 321 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 POM121Q96HA1 1249 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 CNPPD1Q9BV87 410 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 POLDIP3Q9BY77 421 aaKnown RBP11.83□□□□□ -0.52
PTCH1-218ENST00000548945 NMRAL1Q9HBL8 299 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 PROK2Q9HC23 129 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 OPTCQ9UBM4 332 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 RNF14Q9UBS8 474 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 ST6GALNAC2Q9UJ37 374 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 IKBKGQ9Y6K9 419 aa11.83□□□□□ -0.52
PTCH1-218ENST00000548945 IQANK1A0A1B0GTG1 560 aa11.82□□□□□ -0.52
PTCH1-218ENST00000548945 TCRBV9S1A1TA0A576 114 aa11.82□□□□□ -0.52
PTCH1-218ENST00000548945 CCDC189A1A4V9 331 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms