RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 NPIPA3F8WFD2 350 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 G3V3Y1 287 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 C19orf84I3L1E1 186 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 FOXE1O00358 373 aaPredicted RBP12.13□□□□□ -0.47
RTN3-213ENST00000543552 PROM1O43490 865 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 KLK8O60259 260 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SUSD5O60279 629 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SEMA3DO95025 777 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 CLDN9O95484 217 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 GPR75O95800 540 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 IGHG3P01860 377 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 INHBAP08476 426 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 ACVR2AP27037 513 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 GALNSP34059 522 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 GMPRP36959 345 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 RPS13P62277 151 aaKnown RBP12.13□□□□□ -0.47
RTN3-213ENST00000543552 KCNJ2P63252 427 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 CDSNQ15517 529 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 CPSF6Q16630 551 aaKnown RBP eCLIP12.13□□□□□ -0.47
RTN3-213ENST00000543552 HYAL4Q2M3T9 481 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SPRED3Q2MJR0 410 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 ZNF750Q32MQ0 723 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 C6orf163Q5TEZ5 329 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SLC22A10Q63ZE4 541 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 RNF111Q6ZNA4 994 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 OR4N5Q8IXE1 308 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 L3MBTL4Q8NA19 623 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SREK1Q8WXA9 508 aaKnown RBP12.13□□□□□ -0.47
RTN3-213ENST00000543552 RIT1Q92963 219 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 ATP6V1E2Q96A05 226 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SARAFQ96BY9 339 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SPACA9Q96E40 222 aaPredicted RBP12.13□□□□□ -0.47
RTN3-213ENST00000543552 SERPINI1Q99574 410 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 CNPPD1Q9BV87 410 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 SORBS1Q9BX66 1292 aaKnown RBP12.13□□□□□ -0.47
RTN3-213ENST00000543552 ENKD1Q9H0I2 346 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 ACSS3Q9H6R3 686 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 DDX31Q9H8H2 851 aaKnown RBP12.13□□□□□ -0.47
RTN3-213ENST00000543552 KCNJ16Q9NPI9 418 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 CNIH4Q9P003 139 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 B4GALT7Q9UBV7 327 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 ATG4BQ9Y4P1 393 aa12.13□□□□□ -0.47
RTN3-213ENST00000543552 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.13□□□□□ -0.475e-7■□□□□ 10.4
RTN3-213ENST00000543552 AKAP9Q99996 3911 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 A0A0A6YYD5 115 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 A0A0G2JMM0 328 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 A0A1W2PPB8 328 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 A0A1W2PRS3 328 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 PINLYPA6NC86 204 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 KIR3DP1A8MWS1 328 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 CAPN14A8MX76 684 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 AQP7O14520 342 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 HCN1O60741 890 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 WDR1O75083 606 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 SMIM24O75264 130 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 ALDOAP04075 364 aaKnown RBP12.12□□□□□ -0.47
RTN3-213ENST00000543552 HOXD4P09016 255 aaPredicted RBP12.12□□□□□ -0.47
RTN3-213ENST00000543552 RBP1P09455 135 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 FAM58BPP0C7Q3 252 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 CCL3P10147 92 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 SERPINB3P29508 390 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 MAGEA5P43359 124 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 KIR3DL1P43629 444 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 MAN2A2P49641 1150 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 HNRNPH2P55795 449 aaKnown RBP12.12□□□□□ -0.47
RTN3-213ENST00000543552 HERVK_113P63132 956 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 ERVK-8P63133 956 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 SLC7A5Q01650 507 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 SLC10A1Q14973 349 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 TRADDQ15628 312 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 TSNAXIP1Q2TAA8 658 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 C18orf63Q68DL7 685 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 OR52E8Q6IFG1 317 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 B3GNT6Q6ZMB0 384 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 TRILQ7L0X0 811 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 PAGE2Q7Z2X7 111 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 GOLGA7Q7Z5G4 137 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 C9orf40Q8IXQ3 194 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 ZNF295-AS1Q8N0V1 137 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 TAGAPQ8N103 731 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 TMEM251Q8N6I4 163 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 ACBD4Q8NC06 268 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 FAM13CQ8NE31 585 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 LILRB4Q8NHJ6 448 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 PAQR8Q8TEZ7 354 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 PPWD1Q96BP3 646 aaKnown RBP12.12□□□□□ -0.47
RTN3-213ENST00000543552 GAL3ST4Q96RP7 486 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 ERVK-6Q9BXR3 956 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 VPS11Q9H270 941 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 LDAHQ9H6V9 325 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 EXO5Q9H790 373 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 ZDHHC18Q9NUE0 388 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 AHSPQ9NZD4 102 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 ERVK-19Q9WJR5 959 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 RNF6Q9Y252 685 aa12.12□□□□□ -0.47
RTN3-213ENST00000543552 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.12□□□□□ -0.47
RTN3-213ENST00000543552 CELSR1Q9NYQ6 3014 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 A0A1B0GVC2 190 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 KRT38O76015 456 aa12.11□□□□□ -0.47
RTN3-213ENST00000543552 SLC35E2P0CK97 266 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms