RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 BCL6P41182 706 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 SCTRP47872 440 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 OR1D4P47884 311 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 HTR6P50406 440 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 NEK2P51955 445 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 RAP1GDS1P52306 607 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 AQP5P55064 265 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF33BQ06732 778 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 CSTF3Q12996 717 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 E2F2Q14209 437 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 SPDYAQ5MJ70 313 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 NDUFAF7Q7L592 441 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 ASPGQ86U10 573 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 LAPTM4BQ86VI4 370 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 MCATQ8IVS2 390 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 DMRTC2Q8IXT2 367 aaPredicted RBP11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 LAS2Q8IYD9 372 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 CAMKVQ8NCB2 501 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF740Q8NDX6 193 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 CA5BP1Q8WTZ4 195 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 NINJ1Q92982 152 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 SDCCAG3Q96C92 435 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 TUBGCP3Q96CW5 907 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 MAGED4Q96JG8 741 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 RILPQ96NA2 401 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 HBEGFQ99075 208 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 SMR3AQ99954 134 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 ELAC2Q9BQ52 826 aaKnown RBP11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 VKORC1Q9BQB6 163 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 CRB3Q9BUF7 120 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 LIME1Q9H400 295 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 SLC12A4Q9UP95 1085 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 DNAJC15Q9Y5T4 150 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 SCN3AQ9NY46 2000 aa11.7□□□□□ -0.54
CLSTN3-208ENST00000538933 OR5H15A6NDH6 313 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 URADA6NGE7 173 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 MAGEB17A8MXT2 336 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 TXNDC9O14530 226 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 LCMT2O60294 686 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 NRP2O60462 931 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 SH3BGRLO75368 114 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 MED26O95402 600 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 PIK3CBP42338 1070 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 ARFIP2P53365 341 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 VSX2P58304 361 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 RPS13P62277 151 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 ADAM8P78325 824 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 BTKQ06187 659 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 TGM3Q08188 693 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 ABRAXAS2Q15018 415 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 CHSY3Q70JA7 882 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 RNF44Q7L0R7 432 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 SPATA21Q7Z572 469 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 SIAH3Q8IW03 269 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 GBP7Q8N8V2 638 aaPredicted RBP11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 SPATA3Q8NHX4 192 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 WDR20Q8TBZ3 569 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 STT3BQ8TCJ2 826 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 SLC13A3Q8WWT9 602 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 ARSGQ96EG1 525 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 CMTM7Q96FZ5 175 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 SEC16BQ96JE7 1060 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 ZNF285Q96NJ3 590 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 SERPINI1Q99574 410 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 REPIN1Q9BWE0 567 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 RHBGQ9H310 441 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 BRF2Q9HAW0 419 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 DMRT3Q9NQL9 472 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 FARSBQ9NSD9 589 aaKnown RBP11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 CUTCQ9NTM9 273 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 AHSPQ9NZD4 102 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 KLHL14Q9P2G3 628 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 KLK4Q9Y5K2 254 aa11.69□□□□□ -0.54
CLSTN3-208ENST00000538933 NSG1A0A0A6YYJ2 146 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 GOLGA8QA0A0J9YX86 632 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ATP6AP2A0A1C7CYW4 349 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 GOLGA8OA6NCC3 632 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 GOLGA8NF8WBI6 632 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 H0YGG7 62 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 FOXE1O00358 373 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 NDUFAB1O14561 156 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 SRPX2O60687 465 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 CTSVO60911 334 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 CLEC3AO75596 197 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ATP6AP2O75787 350 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 MYO1DO94832 1006 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TOXO94900 526 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 FAM107AO95990 144 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 TGFB1P01137 390 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 STATHP02808 62 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ZGLP1P0C6A0 271 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ITGAMP11215 1152 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 DRD4P21917 467 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 PTX3P26022 381 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 ARF3P61204 181 aaPredicted RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 STXBP1P61764 594 aaKnown RBP11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 HMGCS1Q01581 520 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 RELAQ04206 551 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 FOLH1Q04609 750 aa11.68□□□□□ -0.54
CLSTN3-208ENST00000538933 PCOLCEQ15113 449 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms