RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	MTIF2	P46199	727 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	TMEM50B	P56557	158 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	RPL27	P61353	136 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	RPS27A	P62979	156 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	CDKL1	Q00532	357 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	FASTKD3	Q14CZ7	662 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	KNOP1	Q1ED39	458 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	FASTKD1	Q53R41	847 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	C3P1	Q6ZMU1	363 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	ASRGL1	Q7L266	308 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	MCM10	Q7L590	875 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	ADGRD2	Q7Z7M1	963 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	LRRTM1	Q86UE6	522 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	ITIH5	Q86UX2	942 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	KCNMB4	Q86W47	210 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	C11orf45	Q8TAV5	145 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	U2AF1L4	Q8WU68	220 aa	Known RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	FCGR1B	Q92637	280 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	AGAP4	Q96P64	663 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	ALKBH3	Q96Q83	286 aa	Predicted RBP	4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	TNFRSF13C	Q96RJ3	184 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	NDE1	Q9NXR1	346 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	THEG	Q9P2T0	379 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	PLEKHA6	Q9Y2H5	1048 aa		4.55	□□□□□ -1.68
PRKDC-208	ENST00000536710	MPTX1	A8MV57	137 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	MEI4	A8MW99	385 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	KPNA7	A9QM74	516 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	SH2D1B	O14796	132 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	NXPH4	O95158	308 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	PDGFB	P01127	241 aa	Predicted RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	RALA	P11233	206 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	SELE	P16581	610 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	TMOD1	P28289	359 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	ZFP36L2	P47974	494 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	NUMB	P49757	651 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	TKTL1	P51854	596 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	CRYBA2	P53672	197 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	MYBPC1	Q00872	1141 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	PMP22	Q01453	160 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	CEBPE	Q15744	281 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	INA	Q16352	499 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	CLPP	Q16740	277 aa	Predicted RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	OTUD3	Q5T2D3	398 aa	Predicted RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	LIPK	Q5VXJ0	399 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	STEAP1B	Q6NZ63	245 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	CWC27	Q6UX04	472 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	YRDC	Q86U90	279 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	LINC00518	Q8N0U6	118 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	CCDC110	Q8TBZ0	833 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	RDH11	Q8TC12	318 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	PCNP	Q8WW12	178 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	RSPH1	Q8WYR4	309 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	TMEM45B	Q96B21	275 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	ANKRD27	Q96NW4	1050 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	DEFB118	Q96PH6	123 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	LGMN	Q99538	433 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	CBWD1	Q9BRT8	395 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	WDR41	Q9HAD4	459 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	CNOT2	Q9NZN8	540 aa	Known RBP	4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	IL20RA	Q9UHF4	553 aa		4.54	□□□□□ -1.68
PRKDC-208	ENST00000536710	NPC1L1	Q9UHC9	1359 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	ATP8B3	O60423	1300 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	UBE4B	O95155	1302 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	WDR81	Q562E7	1941 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	IGHV3-20	A0A0C4DH32	117 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	LOC390937	A0A1W2PQ73	354 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	RGSL1	A5PLK6	1076 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	ARHGEF9	O43307	516 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	DUSP11	O75319	330 aa	Known RBP	4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	AKR7A3	O95154	331 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	FH	P07954	510 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	DES	P17661	470 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	GSC	P56915	257 aa	Predicted RBP	4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	RPS4X	P62701	263 aa	Known RBP	4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	KLF5	Q13887	457 aa	Predicted RBP	4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	SLC17A1	Q14916	467 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	UPP1	Q16831	310 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	AGK	Q53H12	422 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	HSP90AA5P	Q58FG0	334 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	IL23R	Q5VWK5	629 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	GDPGP1	Q6ZNW5	385 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	GVQW1	Q8N7I0	195 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	MLKL	Q8NB16	471 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	COLGALT1	Q8NBJ5	622 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	OR56B1	Q8NGI3	324 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	SPPL2A	Q8TCT8	520 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	TMEM37	Q8WXS4	190 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	C14orf79	Q96F83	325 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	DCTN5	Q9BTE1	182 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	NUDT4	Q9NZJ9	180 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	EIF3K	Q9UBQ5	218 aa	Known RBP	4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	AURKC	Q9UQB9	309 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	SLC6A5	Q9Y345	797 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	ATG4B	Q9Y4P1	393 aa		4.53	□□□□□ -1.68
PRKDC-208	ENST00000536710	FBP2	O00757	339 aa		4.52	□□□□□ -1.69
PRKDC-208	ENST00000536710	CFLAR	O15519	480 aa		4.52	□□□□□ -1.69
PRKDC-208	ENST00000536710	TRIM16	O95361	564 aa		4.52	□□□□□ -1.69
PRKDC-208	ENST00000536710	ZCCHC18	P0CG32	403 aa		4.52	□□□□□ -1.69
PRKDC-208	ENST00000536710	TRIM49	P0CI25	452 aa		4.52	□□□□□ -1.69
PRKDC-208	ENST00000536710	TRIM49C	P0CI26	452 aa		4.52	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms