RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SH3D21A4FU49 640 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 HMGN4O00479 90 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 TMPRSS11DO60235 418 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 TBX19O60806 448 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 B4GALT2O60909 372 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 PDE9AO76083 593 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 PCDH8O95206 1070 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 TGM1P22735 817 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 CCT3P49368 545 aaKnown RBP12.48□□□□□ -0.41
LDLR-203ENST00000535915 PCBP4P57723 403 aaKnown RBP12.48□□□□□ -0.41
LDLR-203ENST00000535915 REEP5Q00765 189 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 IRF3Q14653 427 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 PIP5KL1Q5T9C9 394 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 PLEKHG7Q6ZR37 379 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 FAM46DQ8NEK8 389 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 KBTBD8Q8NFY9 601 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 IL4I1Q96RQ9 567 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 MENTQ9BUN1 341 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 POLE4Q9NR33 117 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 REV3LO60673 3130 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 A0A1W2PPV9 198 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 ANHXE9PGG2 379 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 ZW10O43264 779 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 SLC28A2O43868 658 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 OR10H3O60404 316 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 SOX14O95416 240 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 ALOX5P09917 674 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 CD40LGP29965 261 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 CD300CQ08708 224 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 WSCD2Q2TBF2 565 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 DCST1Q5T197 706 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 TCTN3Q6NUS6 607 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 C9orf43Q8TAL5 461 aaPredicted RBP12.48□□□□□ -0.41
LDLR-203ENST00000535915 UCN3Q969E3 161 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 ASB16Q96NS5 453 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 FERD3LQ96RJ6 166 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 CENPOQ9BU64 300 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 RSPO3Q9BXY4 272 aaPredicted RBP12.48□□□□□ -0.41
LDLR-203ENST00000535915 UCK2Q9BZX2 261 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 SEC14L3Q9UDX4 400 aa12.48□□□□□ -0.41
LDLR-203ENST00000535915 MDC1Q14676 2089 aaKnown RBP12.48□□□□□ -0.41
LDLR-203ENST00000535915 SEMA7AO75326 666 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 ADAP00813 363 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 ELAVL4P26378 380 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 SERPINB1P30740 379 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 FEN1P39748 380 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 SEC23BQ15437 767 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 TMEM240Q5SV17 173 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 ZNF367Q7RTV3 350 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 SLC22A16Q86VW1 577 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 RBM45Q8IUH3 476 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 OR5M11Q96RB7 305 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 ZNF607Q96SK3 696 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 NDEL1Q9GZM8 345 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 OSGEPL1Q9H4B0 414 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 ABCB10Q9NRK6 738 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 SEMA3GQ9NS98 782 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 GIN1Q9NXP7 522 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 CNOT2Q9NZN8 540 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 OR1A2Q9Y585 309 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 UNC80Q8N2C7 3258 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 TLR4O00206 839 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 DSCR3O14972 297 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 KMOO15229 486 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 LCMT2O60294 686 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 KDM1AO60341 852 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 H1F0P07305 194 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 OSMP13725 252 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 GPC1P35052 558 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 EIF2DP41214 584 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 FRKP42685 505 aaPredicted RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 FAM46CQ5VWP2 391 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 AMER3Q8N944 861 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 LINC01555Q8NAE3 123 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 WDR36Q8NI36 951 aaKnown RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 SMARCD2Q92925 531 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 ZNF354BQ96LW1 612 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 CDCA4Q9BXL8 241 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 PCDHGA3Q9Y5H0 932 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 DSPPQ9NZW4 1301 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 AGAP5A6NIR3 686 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 H3BN98 237 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 ADRA2AP08913 450 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 OR12D1P0DN82 309 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 S100A5P33763 92 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 KCNJ5P48544 419 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 PCYT1AP49585 367 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 SYPL1Q16563 259 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 CLPPQ16740 277 aaPredicted RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 PLAG1Q6DJT9 500 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 OR4C11Q6IEV9 310 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 RAB42Q8N4Z0 105 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 OR5D16Q8NGK9 328 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 XAGE5Q8WWM1 108 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 C12orf66Q96MD2 445 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 MGLLQ99685 303 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 TREX2Q9BQ50 279 aaPredicted RBP12.47□□□□□ -0.41
LDLR-203ENST00000535915 C17orf62Q9BQA9 187 aa12.47□□□□□ -0.41
LDLR-203ENST00000535915 TPK1Q9H3S4 243 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms