RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 FOXC2Q99958 501 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 TUBB2BQ9BVA1 445 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 SEMA6AQ9H2E6 1030 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 UPF2Q9HAU5 1272 aaKnown RBP3.48□□□□□ -1.85
CD44-235ENST00000532339 LY9Q9HBG7 655 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ZDHHC4Q9NPG8 344 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ZNF302Q9NR11 478 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 OSER1Q9NX31 292 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 YIPF1Q9Y548 306 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 ASB3Q9Y575 518 aa3.48□□□□□ -1.85
CD44-235ENST00000532339 TMEM131Q92545 1883 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 RYR1P21817 5038 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 WNK1Q9H4A3 2382 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 NOTCH3Q9UM47 2321 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 MYH7P12883 1935 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 PRRC2AP48634 2157 aaKnown RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 IGLV5-45A0A087WSX0 123 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 PRSS51A0A1B0GVH4 220 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 A0A1W2PPQ1 181 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CTAGE9A4FU28 777 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CASTOR2A6NHX0 329 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ANXA2P2A6NMY6 339 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 BLOC1S5-TXNDC5H3BN57 136 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 NVLO15381 856 aaKnown RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 TRAPPC3O43617 180 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 SYNGR3O43761 229 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 RANBP6O60518 1105 aaKnown RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 IGLV3-19P01714 112 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 RAB40ALP0C0E4 278 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CTAGE8P0CG41 777 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 FAM106CPP0CH98 169 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ATP5DP30049 168 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 PRKCIP41743 596 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ZNF75DP51815 510 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CAPZA1P52907 286 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 RPL10AP62906 217 aaKnown RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 PLIN5Q00G26 463 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 MZT1Q08AG7 82 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 EIF3IQ13347 325 aaKnown RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 C6orf136Q5SQH8 315 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 GCNT6Q5T4J0 391 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ZSCAN25Q6NSZ9 544 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 FAM171BQ6P995 826 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ZNF704Q6ZNC4 412 aaPredicted RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 SPATA19Q7Z5L4 167 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ADCK2Q7Z695 626 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ITIH5Q86UX2 942 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 MYPOPQ86VE0 399 aaPredicted RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 IQCA1Q86XH1 822 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 MFN1Q8IWA4 741 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CCDC60Q8IWA6 550 aaPredicted RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 CTAGE4Q8IX94 777 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 EFCAB13Q8IY85 973 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CEP57L1Q8IYX8 460 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ZNF713Q8N859 430 aaPredicted RBP3.47□□□□□ -1.85
CD44-235ENST00000532339 SLC4A11Q8NBS3 891 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 GDAP1Q8TB36 358 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 MAPK15Q8TD08 544 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 ROBO4Q8WZ75 1007 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 SMPDL3BQ92485 455 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CORO2AQ92828 525 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 EXT2Q93063 718 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 PSMG2Q969U7 264 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 SPSB1Q96BD6 273 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 FAM81BQ96LP2 452 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 RMDN2Q96LZ7 410 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 INTS14Q96SY0 518 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 NUP58Q9BVL2 599 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 WNT5BQ9H1J7 359 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 HHATLQ9HCP6 504 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CACNG4Q9UBN1 327 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 CROCCQ5TZA2 2017 aa3.47□□□□□ -1.85
CD44-235ENST00000532339 OR5K3A6NET4 321 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 H0YAE9 185 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 MKRN2OSH3BPM6 223 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ZBTB5O15062 677 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 TSPAN1O60635 241 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 B3GAT3O94766 335 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 SORBS2O94875 1100 aaKnown RBP3.46□□□□□ -1.86
CD44-235ENST00000532339 REC8O95072 547 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 GCNT3O95395 438 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ZFYP08048 801 aaPredicted RBP3.46□□□□□ -1.86
CD44-235ENST00000532339 OR2T7P0C7T2 308 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 KRT5P13647 590 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ZNF23P17027 643 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ADRA2CP18825 462 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 NR1D1P20393 614 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 CD27P26842 260 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 TPMTP51580 245 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 BMXP51813 675 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ZNF77Q15935 545 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 ASPRV1Q53RT3 343 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 VWA2Q5GFL6 755 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 GRTP1Q5TC63 336 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 OR7E24Q6IFN5 339 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 BHLHB9Q6PI77 547 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 C11orf88Q6PI97 169 aa3.46□□□□□ -1.86
CD44-235ENST00000532339 RAD9BQ6WBX8 426 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms