RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ENTPD4Q9Y227 616 aa12.86□□□□□ -0.35
CD44-224ENST00000526669 PCDHGA6Q9Y5G7 932 aa12.86□□□□□ -0.35
CD44-224ENST00000526669 DMXL2Q8TDJ6 3036 aa12.86□□□□□ -0.35
CD44-224ENST00000526669 ACACBO00763 2458 aa12.86□□□□□ -0.35
CD44-224ENST00000526669 IGKV3D-11A0A0A0MRZ8 115 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 TCRBV16S1A1N1A0A5B0 115 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 BLACEA4D250 179 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 MASP2O00187 686 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SOCS6O14544 535 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 NKX2-8O15522 239 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 PDPK1O15530 556 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SLC22A3O75751 556 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 PRPS1L1P21108 318 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 DGKQP52824 942 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 CLNS1AP54105 237 aaKnown RBP12.85□□□□□ -0.35
CD44-224ENST00000526669 PDE7AQ13946 482 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 MPEG1Q2M385 716 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 AGKQ53H12 422 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SFT2D3Q587I9 215 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SPANXN4Q5MJ08 99 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 CPTPQ5TA50 214 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 OR4F3Q6IEY1 312 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 DGAT2L6Q6ZPD8 337 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 GK5Q6ZS86 529 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 R3HCC1LQ7Z5L2 792 aaKnown RBP12.85□□□□□ -0.35
CD44-224ENST00000526669 PPP1R32Q7Z5V6 425 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 RAB43Q86YS6 212 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SPACA3Q8IXA5 215 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 DGAT2Q96PD7 388 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 CCNL2Q96S94 520 aaPredicted RBP12.85□□□□□ -0.35
CD44-224ENST00000526669 ZBTB18Q99592 522 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 EFHD1Q9BUP0 239 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 NMUR2Q9GZQ4 415 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 CLMPQ9H6B4 373 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SLAMF7Q9NQ25 335 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SLC35C2Q9NQQ7 365 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 SEMA3GQ9NS98 782 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 GIMAP4Q9NUV9 329 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 ZIM2Q9NZV7 527 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 WBP11Q9Y2W2 641 aaKnown RBP12.85□□□□□ -0.35
CD44-224ENST00000526669 HS3ST3B1Q9Y662 390 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 ZNF780BQ9Y6R6 833 aa12.85□□□□□ -0.35
CD44-224ENST00000526669 TAF4O00268 1085 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 NR5A2O00482 541 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 FCHO1O14526 889 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 NDUFAB1O14561 156 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 OR10H2O60403 315 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 SEC24DO94855 1032 aaPredicted RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 IGHEP01854 428 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 CPMP14384 443 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 PORP16435 677 aaPredicted RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 MMP11P24347 488 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 ITPKBP27987 946 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 NTSP30990 170 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 RPL3P39023 403 aaKnown RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 ZFP36L2P47974 494 aaKnown RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 ATP4BP51164 291 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 IGLV3-21P80748 117 aaPredicted RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 PLIN5Q00G26 463 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 ATP1A4Q13733 1029 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 SSPNQ14714 243 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 LTB4RQ15722 352 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 FAM174BQ3ZCQ3 159 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 TMEM205Q6UW68 189 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 MED25Q71SY5 747 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 CPEB2Q7Z5Q1 589 aaKnown RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 CCDC116Q8IYX3 515 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 FAM9CQ8IZT9 166 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 ADCY4Q8NFM4 1077 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 BCAS4Q8TDM0 211 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 MTERF3Q96E29 417 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 DUSP26Q9BV47 211 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 DPH1Q9BZG8 443 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 SAR1AQ9NR31 198 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 SDR39U1Q9NRG7 319 aaPredicted RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 EHD3Q9NZN3 535 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 CCDC167Q9P0B6 97 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 ARMCX1Q9P291 453 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 C19orf25Q9UFG5 118 aaPredicted RBP12.84□□□□□ -0.35
CD44-224ENST00000526669 PSME2Q9UL46 239 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 ARL2BPQ9Y2Y0 163 aa12.84□□□□□ -0.35
CD44-224ENST00000526669 RRP8O43159 456 aaKnown RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 EFSO43281 561 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 TBX19O60806 448 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 CT62P0C5K7 136 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 COX6A1P12074 109 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 TNNI3P19429 210 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 CSNK2A2P19784 350 aaPredicted RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 NT5EP21589 574 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 S100A3P33764 101 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 STT3AP46977 705 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 PGDP52209 483 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 NCBP2P52298 156 aaKnown RBP eCLIP12.83□□□□□ -0.36
CD44-224ENST00000526669 POLR2JP52435 117 aaKnown RBP12.83□□□□□ -0.36
CD44-224ENST00000526669 C21orf58P58505 322 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 PHC1P78364 1004 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 SERTAD2Q14140 314 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 PCOLCEQ15113 449 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 TIGD2Q4W5G0 525 aa12.83□□□□□ -0.36
CD44-224ENST00000526669 GKAP1Q5VSY0 366 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms