RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SENP5Q96HI0 755 aaPredicted RBP10.64□□□□□ -0.71
SDCBP-211ENST00000523441 QRFPRQ96P65 431 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 DGAT2Q96PD7 388 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 FAM111AQ96PZ2 611 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 F2RL3Q96RI0 385 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 SERINC2Q96SA4 455 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 REXO4Q9GZR2 422 aaKnown RBP10.64□□□□□ -0.71
SDCBP-211ENST00000523441 PCDHGB3Q9Y5G1 929 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 NPFFR2Q9Y5X5 522 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 KCNE2Q9Y6J6 123 aa10.64□□□□□ -0.71
SDCBP-211ENST00000523441 C2orf72A6NCS6 295 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 MBD3L3A6NE82 208 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 NCF1BA6NI72 391 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 NCF1CA8MVU1 366 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 H0Y3Z8 333 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 CDC7O00311 574 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 SAP18O00422 153 aaKnown RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 PRKRAO75569 313 aaKnown RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 C1QAP02745 245 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 C1GALT1C1LP0DN25 315 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 CYP4B1P13584 511 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 NCF1P14598 390 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 FPR1P21462 350 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 RPL21P46778 160 aaKnown RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 PTH2RP49190 550 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 AP1S2P56377 157 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 FBXW4P57775 412 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 HERVK_113P63132 956 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 ERVK-8P63133 956 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 FAM27E3Q08E93 113 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 RCN2Q14257 317 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 ZNF267Q14586 743 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 EFTUD2Q15029 972 aaKnown RBP eCLIP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 SF3B4Q15427 424 aaKnown RBP eCLIP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 MPEG1Q2M385 716 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 LYPD8Q6UX82 237 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 C4orf22Q6V702 233 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 SLC29A4Q7RTT9 530 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 ZNF550Q7Z398 422 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 PRR22Q8IZ63 422 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 OR2L5Q8NG80 312 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 OR8K3Q8NH51 312 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 MBD3L2Q8NHZ7 208 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 RILPQ96NA2 401 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 WFIKKN1Q96NZ8 548 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 HS3ST6Q96QI5 342 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 PIP5K1AQ99755 562 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 TUBA1CQ9BQE3 449 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 FAM167BQ9BTA0 163 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 MED18Q9BUE0 208 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 ERVK-6Q9BXR3 956 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 PRDM14Q9GZV8 571 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 TSPY26PQ9H489 355 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 SH2D2AQ9NP31 389 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 PPANQ9NQ55 473 aaKnown RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 TEX10Q9NXF1 929 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 QPCTLQ9NXS2 382 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 CNIH4Q9P003 139 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 JKAMPQ9P055 326 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 CNOT11Q9UKZ1 510 aaKnown RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 ERVK-19Q9WJR5 959 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 CHCHD2Q9Y6H1 151 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-211ENST00000523441 CUBNO60494 3623 aa10.63□□□□□ -0.71
SDCBP-211ENST00000523441 IQANK1A0A1B0GTG1 560 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 CD8B2A6NJW9 211 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 RNF223E7ERA6 249 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 FGF17O60258 216 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 BANF1O75531 89 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 GOSR1O95249 250 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 CPN2P22792 545 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 SERPINB3P29508 390 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 CDK9P50750 372 aaKnown RBP10.62□□□□□ -0.71
SDCBP-211ENST00000523441 NAGLUP54802 743 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 CDK16Q00536 496 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 DMTNQ08495 405 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 TNK1Q13470 666 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 SERTAD2Q14140 314 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 BBS9Q3SYG4 887 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 KBTBD12Q3ZCT8 623 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 ANKRD34AQ69YU3 496 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 VASNQ6EMK4 673 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 ABHD17CQ6PCB6 329 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 PRSS57Q6UWY2 283 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 AGGF1Q8N302 714 aaeCLIP10.62□□□□□ -0.71
SDCBP-211ENST00000523441 ZNF441Q8N8Z8 693 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 PPP1R14CQ8TAE6 165 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 ANKRD9Q96BM1 317 aaPredicted RBP10.62□□□□□ -0.71
SDCBP-211ENST00000523441 SORBS1Q9BX66 1292 aaKnown RBP10.62□□□□□ -0.71
SDCBP-211ENST00000523441 YAE1D1Q9NRH1 226 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 GUCA1BQ9UMX6 200 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 TESMINQ9Y4I5 508 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 EXPH5Q8NEV8 1989 aa10.62□□□□□ -0.71
SDCBP-211ENST00000523441 A0A087X1B8 175 aa10.61□□□□□ -0.71
SDCBP-211ENST00000523441 MAGEB16A2A368 324 aa10.61□□□□□ -0.71
SDCBP-211ENST00000523441 DEFB108AA8MXU0 73 aa10.61□□□□□ -0.71
SDCBP-211ENST00000523441 CTIFO43310 598 aaKnown RBP10.61□□□□□ -0.71
SDCBP-211ENST00000523441 DYRK3O43781 588 aa10.61□□□□□ -0.71
SDCBP-211ENST00000523441 TRIM3O75382 744 aaPredicted RBP10.61□□□□□ -0.71
SDCBP-211ENST00000523441 KRT14P02533 472 aa10.61□□□□□ -0.71
SDCBP-211ENST00000523441 FGGP02679 453 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms