RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 RAB3DO95716 219 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 LALBAP00709 142 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SOX10P56693 466 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 COX15Q7KZN9 410 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM200AQ86VY9 491 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 FAM110BQ8TC76 370 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 FOXRED1Q96CU9 486 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 OR52A5Q9H2C5 316 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 GAREM1Q9H706 876 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 MOB1AQ9H8S9 216 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SIAEQ9HAT2 523 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF701Q9NV72 531 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SMOXQ9NWM0 555 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ABRACLQ9P1F3 81 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ADAMTS6Q9UKP5 1117 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNS2Q9ULS6 477 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 A3GALT2U3KPV4 340 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 TCRBV5S4A2TA0A5A2 114 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 GAPDHSO14556 408 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 JUNP05412 331 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 PSPHP78330 225 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 DSC2Q02487 901 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 MRPL49Q13405 166 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 MLC1Q15049 377 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 POU4F3Q15319 338 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 C11orf91Q3C1V1 193 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 KDELC1Q6UW63 502 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 C19orf35Q6ZS72 473 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF439Q8NDP4 499 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF417Q8TAU3 575 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 CNIH3Q8TBE1 160 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 RNF141Q8WVD5 230 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 PLD4Q96BZ4 506 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 IFT22Q9H7X7 185 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 CRTAC1Q9NQ79 661 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 SDHAF2Q9NX18 166 aa10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF223Q9UK11 482 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-217ENST00000512946 IL1AP01583 271 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ADH1AP07327 375 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 METTL15P1P0C7V9 234 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 UFM1P61960 85 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 PMS2P3Q13401 168 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 CCINQ13939 588 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SLBPQ14493 270 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM150AQ86TG1 271 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC51BQ86UW2 128 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 IFNLR1Q8IU57 520 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SOCS4Q8WXH5 440 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 QRSL1Q9H0R6 528 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 EVA1AQ9H8M9 152 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 CARS2Q9HA77 564 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 NIT2Q9NQR4 276 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 VNN3Q9NY84 501 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 FZD10Q9ULW2 581 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 TEX264Q9Y6I9 313 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 POLR1AO95602 1720 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 TUBAL3A6NHL2 446 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 UNC119BA6NIH7 251 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 CLDN24A6NM45 220 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 KHNYNO15037 678 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 TYROBPO43914 113 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 C1RP00736 705 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 C4BPAP04003 597 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 STSP08842 583 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 H2BFMP0C1H6 154 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ADRB3P13945 408 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 PYCR1P32322 319 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 AKR1C2P52895 323 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 GALK2Q01415 458 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNJ11Q14654 390 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 LDB1Q86U70 411 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 C1orf52Q8N6N3 182 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 HAS2Q92819 552 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 KIAA1143Q96AT1 154 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 BMFQ96LC9 184 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 CNN2Q99439 309 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 PIGMQ9H3S5 423 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNIP2Q9NS61 270 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 NOCTQ9UK39 431 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 CLEC4EQ9ULY5 219 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 KPTNQ9Y664 436 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 K7EPK0 472 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 AQP9O43315 295 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 RNF13O43567 381 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 KCNJ13O60928 360 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 LGALS2P05162 132 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SERPINA7P05543 415 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 RAB40ALP0C0E4 278 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 GAAP10253 952 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 NDUFV2P19404 249 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 NFYBP25208 207 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 RIDAP52758 137 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 WNT4P56705 351 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF763Q0D2J5 394 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SLAMF1Q13291 335 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SERINC3Q13530 473 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 EML3Q32P44 896 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 SFRP4Q6FHJ7 346 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 TPRA1Q86W33 373 aa10.78□□□□□ -0.68
LIMCH1-217ENST00000512946 LRRC28Q86X40 367 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms