RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MRPL28Q13084 256 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 IL11RAQ14626 422 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 SMC1AQ14683 1233 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 RCN1Q15293 331 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 LACTB2Q53H82 288 aaPredicted RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 DDX59Q5T1V6 619 aaKnown RBP eCLIP1.68□□□□□ -2.14
NUP54-208ENST00000508604 AGBL2Q5U5Z8 902 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 KRT39Q6A163 491 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 RUFY3Q7L099 469 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 SPATA21Q7Z572 469 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 CAMKMTQ7Z624 323 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 KIAA1328Q86T90 577 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 DZIP1Q86YF9 867 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 APOBEC3FQ8IUX4 373 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 SAMD12Q8N8I0 201 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 IQUBQ8NA54 791 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 SMYD1Q8NB12 490 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 ACMSDQ8TDX5 336 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 GRK7Q8WTQ7 553 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 ANKRD49Q8WVL7 239 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 PIBF1Q8WXW3 757 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 ZNF75CPQ92670 426 aaPredicted RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 CFAP36Q96G28 342 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 EPSTI1Q96J88 318 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 ZNF184Q99676 751 aaPredicted RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 CCDC106Q9BWC9 280 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 NACAP1Q9BZK3 213 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 SLC7A5P2Q9GIP4 190 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 FAM107BQ9H098 131 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 ABCG4Q9H172 646 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 AMBNQ9NP70 447 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 CFDP1Q9UEE9 299 aaPredicted RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 CHORDC1Q9UHD1 332 aaPredicted RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 CTNNA3Q9UI47 895 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 ANAPC2Q9UJX6 822 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 RRP15Q9Y3B9 282 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 V9GYY5 206 aaPredicted RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 TMEM94Q12767 1356 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 PLEKHG2Q9H7P9 1386 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 BAZ1BQ9UIG0 1483 aaKnown RBP1.68□□□□□ -2.14
NUP54-208ENST00000508604 CCDC144AA2RUR9 1427 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 KIAA1107Q9UPP5 1409 aa1.68□□□□□ -2.14
NUP54-208ENST00000508604 A0A1B0GUA9 196 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 hCG_1809904A0A1W2PP81 198 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 A0A1W2PPE2 198 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 A0A1W2PR64 198 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 C19orf81C9J6K1 198 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 E5RGE8 158 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 H0YC42 278 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 MCF2LO15068 1137 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TTI1O43156 1089 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 DIAPH2O60879 1101 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TBX10O75333 385 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 FGFR1OPO95684 399 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 IVLP07476 585 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ABCB1P08183 1280 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 IDO1P14902 403 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 OAS2P29728 719 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 HSPA4P34932 840 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 HMGCLP35914 325 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 OR3A3P47888 321 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ARPC4P59998 168 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 CXCL6P80162 114 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 COG2Q14746 738 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 RASA2Q15283 850 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 KYNUQ16719 465 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 RABL6Q3YEC7 729 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 CCDC14Q49A88 953 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ERMARDQ5T6L9 678 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 ABRAXAS1Q6UWZ7 409 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 COX8CQ7Z4L0 72 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TMEM110Q86TL2 294 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TLK2Q86UE8 772 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 SYT2Q8N9I0 419 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 MSANTD4Q8NCY6 345 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 FAM81AQ8TBF8 368 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 SPATA18Q8TC71 538 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 LIPHQ8WWY8 451 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.67□□□□□ -2.14
NUP54-208ENST00000508604 LZICQ8WZA0 190 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 PPP1R14BQ96C90 147 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 DTNBP1Q96EV8 351 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 PGAP3Q96FM1 320 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 C8orf76Q96K31 380 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 THUMPD2Q9BTF0 503 aaKnown RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 APOL6Q9BWW8 343 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TSGA10Q9BZW7 698 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 DPEP2Q9H4A9 486 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 KLRF1Q9NZS2 232 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 NFKBIL1Q9UBC1 381 aaPredicted RBP1.67□□□□□ -2.14
NUP54-208ENST00000508604 MORF4L1Q9UBU8 362 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 NCKAP1Q9Y2A7 1128 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 NSG2Q9Y328 171 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TTLL3Q9Y4R7 772 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 TRPV2Q9Y5S1 764 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 NPC1L1Q9UHC9 1359 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 A0A0B4J203 849 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 SPRR5A0A1B0GTR4 108 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 LINC00854A0A1B0GVQ3 168 aa1.67□□□□□ -2.14
NUP54-208ENST00000508604 KIF2AO00139 706 aaPredicted RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms