RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CERS2Q96G23 380 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 MED8Q96G25 268 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 WBP1Q96G27 269 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 PRAP1Q96NZ9 151 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 OLFM1Q99784 485 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 SELENOSQ9BQE4 189 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 MESP1Q9BRJ9 268 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 TMEM79Q9BSE2 394 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 FAM167BQ9BTA0 163 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 LRRC1Q9BTT6 524 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 QTRT1Q9BXR0 403 aaKnown RBP4.31□□□□□ -1.72
NUP54-206ENST00000508465 UNKQ9C0B0 810 aaKnown RBP4.31□□□□□ -1.72
NUP54-206ENST00000508465 ATG10Q9H0Y0 220 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 FANCEQ9HB96 536 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 SMYD2Q9NRG4 433 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 FAM114A2Q9NRY5 505 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 SLC22A11Q9NSA0 550 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 TUBA8Q9NY65 449 aaPredicted RBP4.31□□□□□ -1.72
NUP54-206ENST00000508465 TAS2R13Q9NYV9 303 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 GRHL1Q9NZI5 618 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 SH3BP4Q9P0V3 963 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 IFT80Q9P2H3 777 aaPredicted RBP4.31□□□□□ -1.72
NUP54-206ENST00000508465 TRMT6Q9UJA5 497 aaKnown RBP4.31□□□□□ -1.72
NUP54-206ENST00000508465 KCND3Q9UK17 655 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 IKZF3Q9UKT9 509 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 SH2B3Q9UQQ2 575 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 PDE10AQ9Y233 779 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 MAU2Q9Y6X3 613 aa4.31□□□□□ -1.72
NUP54-206ENST00000508465 SEC16AO15027 2179 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CCDC88CQ9P219 2028 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 IGKV1-8A0A0C4DH67 115 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 HYKKA2RU49 373 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ARGFXA6NJG6 315 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 C21orf140B9A014 251 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 F5H697 171 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 H0YGG7 62 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CDC7O00311 574 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 HAT1O14929 419 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ZSCAN9O15535 394 aaPredicted RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 TRIAP1O43715 76 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 LCMT2O60294 686 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 ALOX12BO75342 701 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 RFPL1O75677 317 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 KLF7O75840 302 aaPredicted RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 TSPAN12O95859 305 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CATP04040 527 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 MPC1LP0DKB6 136 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 AGXTP21549 392 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ATP5DP30049 168 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CMPK1P30085 196 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 SKIV2L2P42285 1042 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 NR4A2P43354 598 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 MAGEA4P43358 317 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 GPX6P59796 221 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ARF3P61204 181 aaPredicted RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 DCDP81605 110 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 MC1RQ01726 317 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 GUCY2DQ02846 1103 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 PRDX1Q06830 199 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 NAE1Q13564 534 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 BMPR2Q13873 1038 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 PHKG1Q16816 387 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 HKDC1Q2TB90 917 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 C18orf21Q32NC0 220 aaPredicted RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 ZNF260Q3ZCT1 412 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 UBAP2Q5T6F2 1119 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 ARMC3Q5W041 872 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 UGT3A1Q6NUS8 523 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CYB5D1Q6P9G0 228 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 FAM198BQ6UWH4 519 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ZDHHC24Q6UX98 284 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ZNF66Q6ZN08 573 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 NEK10Q6ZWH5 1172 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ADCK2Q7Z695 626 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ZC3HC1Q86WB0 502 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 PAQR7Q86WK9 346 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CEP97Q8IW35 865 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CMIPQ8IY22 773 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 SAMD14Q8IZD0 417 aaPredicted RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 RAB42Q8N4Z0 105 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 NOA1Q8NC60 698 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 LSM14AQ8ND56 463 aaKnown RBP4.3□□□□□ -1.72
NUP54-206ENST00000508465 HMGCLL1Q8TB92 370 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 FBXO25Q8TCJ0 367 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 MAGEC3Q8TD91 643 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 MCOLN3Q8TDD5 553 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ANKRD49Q8WVL7 239 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 IFT81Q8WYA0 676 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 KCNJ9Q92806 393 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 RFKQ969G6 155 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ZUFSPQ96AP4 578 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 PYCR2Q96C36 320 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 LRRC39Q96DD0 335 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 CCDC138Q96M89 665 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 RUNDC3BQ96NL0 473 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 GBP5Q96PP8 586 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 ARPC5LQ9BPX5 153 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 NAT9Q9BTE0 207 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 EFHD1Q9BUP0 239 aa4.3□□□□□ -1.72
NUP54-206ENST00000508465 NLNQ9BYT8 704 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms