RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 LHX9Q9NQ69 397 aa11.36□□□□□ -0.59
NUP54-202ENST00000502850 SIRT3Q9NTG7 399 aaPredicted RBP11.36□□□□□ -0.59
NUP54-202ENST00000502850 FBXL12Q9NXK8 326 aa11.36□□□□□ -0.59
NUP54-202ENST00000502850 GALNT8Q9NY28 637 aa11.36□□□□□ -0.59
NUP54-202ENST00000502850 CLDND1Q9NY35 253 aa11.36□□□□□ -0.59
NUP54-202ENST00000502850 SEC14L3Q9UDX4 400 aa11.36□□□□□ -0.59
NUP54-202ENST00000502850 ZFR2Q9UPR6 939 aaKnown RBP11.36□□□□□ -0.59
NUP54-202ENST00000502850 ENTPD4Q9Y227 616 aa11.36□□□□□ -0.59
NUP54-202ENST00000502850 PLXND1Q9Y4D7 1925 aa11.36□□□□□ -0.59
NUP54-202ENST00000502850 A0A1W2PQU0 124 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 PRR19A6NJB7 356 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 H3BQ06 376 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 SLC28A2O43868 658 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 TMPRSS11DO60235 418 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 RNGTTO60942 597 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 PAK4O96013 591 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 SERPIND1P05546 499 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 CEACAM5P06731 702 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 NTSR1P30989 418 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 WASP42768 502 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 CTSKP43235 329 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 BMXP51813 675 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 CRISP3P54108 245 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 UGT2B15P54855 530 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 STXBP1P61764 594 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.35□□□□□ -0.592e-6■□□□□ 10.7
NUP54-202ENST00000502850 HYAL1Q12794 435 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 TP53BP2Q13625 1128 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 MLF2Q15773 248 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 SMN1Q16637 294 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 NDUFA9Q16795 377 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 ATAT1Q5SQI0 421 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 DCST1Q5T197 706 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 NDUFAF5Q5TEU4 345 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 MTSS1LQ765P7 747 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 CACUL1Q86Y37 369 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 PLD3Q8IV08 490 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 MMP21Q8N119 569 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 GJD3Q8N144 294 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 APOBEC4Q8WW27 367 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 CHFRQ96EP1 664 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 HSPBAP1Q96EW2 488 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 SCARF2Q96GP6 870 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 DHRS1Q96LJ7 313 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 BBS4Q96RK4 519 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 NIPSNAP1Q9BPW8 284 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 BTBD2Q9BX70 525 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 RACGAP1Q9H0H5 632 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 TRIM45Q9H8W5 580 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 SLAMF7Q9NQ25 335 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 SLC35C2Q9NQQ7 365 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 FAIMQ9NVQ4 179 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 CLN6Q9NWW5 311 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 LYARQ9NX58 379 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 SNX7Q9UNH6 387 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 SLC9A8Q9Y2E8 581 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 WDR37Q9Y2I8 494 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 DOCK8Q8NF50 2099 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 ZAR1LA6NP61 321 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 HMGN4O00479 90 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 CASC3O15234 703 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 CNOT3O75175 753 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 ZBTB11O95625 1053 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 H1F0P07305 194 aaKnown RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 PIPP12273 146 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 CD36P16671 472 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 GABRB1P18505 474 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 HIST1H1TP22492 207 aaPredicted RBP11.35□□□□□ -0.59
NUP54-202ENST00000502850 UGT2B10P36537 528 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 KCNJ5P48544 419 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 CRISP1P54107 249 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 KIAA1024LP59773 190 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 PRR5P85299 388 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 DGCR6Q14129 220 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 NR1D2Q14995 579 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 RGS21Q2M5E4 152 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 TIMM50Q3ZCQ8 353 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 TOR1AIP1Q5JTV8 583 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 ANKRD54Q6NXT1 300 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 ZNF367Q7RTV3 350 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 UBE3DQ7Z6J8 389 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 MFSD9Q8NBP5 474 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 MINDY2Q8NBR6 621 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 FAM46DQ8NEK8 389 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 OR2L5Q8NG80 312 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 OR9Q2Q8NGE9 314 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 OR52E1Q8NGJ3 308 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 OR14C36Q8NHC7 312 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 COX4I2Q96KJ9 171 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 AMDHD1Q96NU7 426 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 OR2M4Q96R27 311 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 GABRG3Q99928 467 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 C17orf62Q9BQA9 187 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 KXD1Q9BQD3 176 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 APOOQ9BUR5 198 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 UCK2Q9BZX2 261 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 ROGDIQ9GZN7 287 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 IGFLR1Q9H665 355 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 BCL2L10Q9HD36 194 aa11.35□□□□□ -0.59
NUP54-202ENST00000502850 ZDHHC4Q9NPG8 344 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms