RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, human

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-210	ENST00000497815	NSG1	A0A0A6YYJ2	146 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	ARGFX	A6NJG6	315 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	SRRM3	A6NNA2	597 aa	Predicted RBP	11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	GABRR3	A8MPY1	467 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815		C9JVG2	144 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	SCAMP2	O15127	329 aa	Known RBP	11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	CYC1	P08574	325 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	COX6A1	P12074	109 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	CPM	P14384	443 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	COX7A2	P14406	83 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	IDO1	P14902	403 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	NCF2	P19878	526 aa	Predicted RBP	11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	PRPS1L1	P21108	318 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	UCN	P55089	124 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	CLDN8	P56748	225 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	UFM1	P61960	85 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	PLIN5	Q00G26	463 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	DUSP2	Q05923	314 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	VAC14	Q08AM6	782 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	SERTAD2	Q14140	314 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	PCOLCE	Q15113	449 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	PGS1	Q32NB8	556 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	ZNF385B	Q569K4	471 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	PAPD4	Q6PIY7	484 aa	Known RBP	11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	DGAT2L6	Q6ZPD8	337 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	SPATA21	Q7Z572	469 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	CNRIP1	Q96F85	164 aa	Predicted RBP	11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	BBS4	Q96RK4	519 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	ZNF700	Q9H0M5	742 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	ZNF160	Q9HCG1	818 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	SLC35C2	Q9NQQ7	365 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	GIMAP4	Q9NUV9	329 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	EHD3	Q9NZN3	535 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	ADAM21	Q9UKJ8	722 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	MAN2B2	Q9Y2E5	1009 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	GPR45	Q9Y5Y3	372 aa		11.14	□□□□□ -0.63
CUX1-210	ENST00000497815	LOC102723996	A0A087X1L8	192 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	IGHV1-45	A0A0A0MS14	117 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	C17orf105	B2RV13	164 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815		K7ENP7	123 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	PCDH17	O14917	1159 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	ANKRD28	O15084	1053 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	POR	P16435	677 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	CSNK2A2	P19784	350 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	EFNA1	P20827	205 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	NT5E	P21589	574 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	RPL3	P39023	403 aa	Known RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	STT3A	P46977	705 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	PGD	P52209	483 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	STX1B	P61266	288 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	IGLV3-21	P80748	117 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	CHAF1B	Q13112	559 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	GSTA3	Q16772	222 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	ST3GAL2	Q16842	350 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	INO80C	Q6PI98	192 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	C19orf48	Q6RUI8	117 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	NDUFAF7	Q7L592	441 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	R3HCC1L	Q7Z5L2	792 aa	Known RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	RIMKLA	Q8IXN7	391 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	CCDC116	Q8IYX3	515 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	FAM9C	Q8IZT9	166 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	MIER2	Q8N344	545 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	LRRC25	Q8N386	305 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	C10orf82	Q8WW14	230 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	THAP4	Q8WY91	577 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	CIDEC	Q96AQ7	238 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	MTERF3	Q96E29	417 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	RBM18	Q96H35	190 aa	Known RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	CRELD1	Q96HD1	420 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	VPS50	Q96JG6	964 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	TEX37	Q96LM6	180 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	IP6K3	Q96PC2	410 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	ZBTB18	Q99592	522 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	LPAR4	Q99677	370 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	WDR77	Q9BQA1	342 aa	Predicted RBP	11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	BRINP2	Q9C0B6	783 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	ADAP2	Q9NPF8	381 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	ATP6V1H	Q9UI12	483 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	TRIM33	Q9UPN9	1127 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	POLH	Q9Y253	713 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	CLCA3P	Q9Y6N3	262 aa		11.13	□□□□□ -0.63
CUX1-210	ENST00000497815	PCSK5	Q92824	1860 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	PDPK1	O15530	556 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	HP	P00738	406 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	CELA2A	P08217	269 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	SLC35E2	P0CK97	266 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	LAMP1	P11279	417 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	NTS	P30990	170 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	NCBP2	P52298	156 aa	Known RBP eCLIP	11.12	□□□□□ -0.63	2e-6	■■□□□ 13
CUX1-210	ENST00000497815	CLNS1A	P54105	237 aa	Known RBP	11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	PDE7A	Q13946	482 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	ELAVL1	Q15717	326 aa	Known RBP	11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	LTB4R	Q15722	352 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	BTBD16	Q32M84	506 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	PDCD4	Q53EL6	469 aa	Known RBP	11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	CRTC2	Q53ET0	693 aa	Predicted RBP	11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	CPTP	Q5TA50	214 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	CPZ	Q66K79	652 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	PAOX	Q6QHF9	649 aa		11.12	□□□□□ -0.63
CUX1-210	ENST00000497815	ST13P4	Q8IZP2	240 aa	Predicted RBP	11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms