RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZNF611Q8N823 705 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 PHOSPHO2Q8TCD6 241 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF431Q8TF32 576 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 POU2F3Q9UKI9 436 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 HSPB11Q9Y547 144 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 DNAJC25-GNG10A0A024R161 153 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SPARCP09486 303 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 STT3AP46977 705 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 OR1E2P47887 323 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 MAD2L1BPQ15013 274 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TCEAL1Q15170 157 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 C4orf46Q504U0 113 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TECRLQ5HYJ1 363 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 OR4C11Q6IEV9 310 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 UNC5DQ6UXZ4 953 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF565Q8N9K5 539 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 HCFC1R1Q9NWW0 138 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 UCKL1Q9NWZ5 548 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 C2orf92A0A1B0GVN3 265 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 FAM189A1O60320 539 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 P04436 131 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ARSAP15289 507 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 MAPK3P27361 379 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 GJA5P36382 358 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TM4SF4P48230 202 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 CDKL1Q00532 357 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 DOC2AQ14183 400 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TCTE1Q5JU00 501 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF761Q86XN6 746 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 CCDC107Q8WV48 283 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 PEX11GQ96HA9 241 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 HHIPQ96QV1 700 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 KCNK13Q9HB14 408 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 RGPD8O14715 1765 aaPredicted RBP12.58□□□□□ -0.39
PTPRF-215ENST00000496447 TEX13CA0A0J9YWL9 993 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 APOC1P02654 83 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 IL7P13232 177 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 PROZP22891 400 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 HNRNPFP52597 415 aaKnown RBP12.58□□□□□ -0.4
PTPRF-215ENST00000496447 DIO3P55073 304 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 NIPAL4Q0D2K0 466 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 BTBD16Q32M84 506 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 SCGB2B2Q4G0G5 96 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 GXYLT1Q4G148 440 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 CARD17Q5XLA6 110 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 ASRGL1Q7L266 308 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 LRRTM3Q86VH5 581 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 CARM1Q86X55 608 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 KRTCAP2Q8N6L1 136 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 MARCH4Q9P2E8 410 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-215ENST00000496447 LATO43561 262 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 LILRB3O75022 631 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 GSTT2P0CG29 244 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 PGCP20142 388 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 SPATS1Q496A3 300 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 PRAMEF17Q5VTA0 474 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 NSMAFQ92636 917 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 BORCS8Q96FH0 119 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 ITPAQ9BY32 194 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 MMP27Q9H306 513 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 LIPT1Q9Y234 373 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 A0A1B0GVG6 124 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 H0YJX3 145 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 HLA-DPB1P04440 258 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 PROS1P07225 676 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 ZNF182P17025 639 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-215ENST00000496447 NSDHLQ15738 373 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 TSTQ16762 297 aaKnown RBP12.58□□□□□ -0.4
PTPRF-215ENST00000496447 TBRG1Q3YBR2 411 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 DUS1LQ6P1R4 473 aaKnown RBP12.58□□□□□ -0.4
PTPRF-215ENST00000496447 OR56A3Q8NH54 315 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 NINJ1Q92982 152 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 CPEB1Q9BZB8 566 aaKnown RBP12.58□□□□□ -0.4
PTPRF-215ENST00000496447 MAB21L2Q9Y586 359 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 ACOT7O00154 380 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 PTGR1Q14914 329 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 C15orf40Q8WUR7 153 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 SEC14L1Q92503 715 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 NAA11Q9BSU3 229 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-215ENST00000496447 MEAF6Q9HAF1 191 aa12.58□□□□□ -0.4
PTPRF-215ENST00000496447 A0A096LPI6 279 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 MBLAC1A4D2B0 266 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-215ENST00000496447 BCAS2O75934 225 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-215ENST00000496447 DRD2P14416 443 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 DSG2Q14126 1118 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 ZNF234Q14588 700 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 PPP1R3AQ16821 1122 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 DNAJA3Q96EY1 480 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 MSANTD3Q96H12 275 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 CASD1Q96PB1 797 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 ZBTB20Q9HC78 741 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-215ENST00000496447 ADAMTS5Q9UNA0 930 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 CD72P21854 359 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 RORAP35398 523 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 CDKN2DP55273 166 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 TAS2R43P59537 309 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 OR8K5Q8NH50 307 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 SCRN2Q96FV2 425 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 TMEM80Q96HE8 168 aa12.57□□□□□ -0.4
PTPRF-215ENST00000496447 CHIAQ9BZP6 476 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms