RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 NVLO15381 856 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 BIRC5O15392 142 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MAGEB3O15480 346 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MAGEC1O60732 1142 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SHOX2O60902 331 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 LRP3O75074 770 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ENTPD3O75355 529 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SERPINB7O75635 380 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 GNA14O95837 355 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PGK1P00558 417 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 DCNP07585 359 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 RETP07949 1114 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TFPTP0C1Z6 253 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 RHOXF2BP0C7M4 288 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SFTPCP11686 197 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF3P17036 446 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 POLR2EP19388 210 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MUTP22033 750 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 DNAJB1P25685 340 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PBLDP30039 288 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CSTF2P33240 577 aaKnown RBP eCLIP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SERPINB6P35237 376 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NNMTP40261 264 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TMED10P49755 219 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ARHGDIBP52566 201 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 BLVRAP53004 296 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 LIMK1P53667 647 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ADARP55265 1226 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CDH13P55290 713 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MAZP56270 477 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 GNGT1P63211 74 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CSTF1Q05048 431 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 KDSRQ06136 332 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 HSPA14Q0VDF9 509 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 AP1B1Q10567 949 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 BAATQ14032 418 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 STK38Q15208 465 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PPP1R7Q15435 360 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CYTH1Q15438 398 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MOGQ16653 247 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 KLHL38Q2WGJ6 581 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ITPRIPL2Q3MIP1 535 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 Q3ZCU0 254 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CBWD6Q4V339 395 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FAM133BQ5BKY9 247 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CBWD3Q5JTY5 395 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SLC10A5Q5PT55 438 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CLVS2Q5SYC1 327 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 RNASEH2BQ5TBB1 312 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 IL23RQ5VWK5 629 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TEX38Q6PEX7 206 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 KIF6Q6ZMV9 814 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 C3orf62Q6ZUJ4 267 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 RAPH1Q70E73 1250 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TMCO2Q7Z6W1 182 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ZER1Q7Z7L7 766 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 LRRTM1Q86UE6 522 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 RTN4RL2Q86UN3 420 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 GTSCR1Q86UQ5 136 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NUDT13Q86X67 352 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 HOGA1Q86XE5 327 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 PLA2G4DQ86XP0 818 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 LINC00346Q8IVM7 164 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC83Q8IWF9 413 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 OR8H2Q8N162 312 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 LYG1Q8N1E2 194 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SCML4Q8N228 414 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CSGALNACT2Q8N6G5 542 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MAPKAPK5-AS1Q8N8E1 139 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FAM133AQ8N9E0 248 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC63Q8NA47 563 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 AVL9Q8NBF6 648 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NPEPL1Q8NDH3 523 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 IPMKQ8NFU5 416 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 OR7G1Q8NGA0 311 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 OR5AP2Q8NGF4 316 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 VANGL1Q8TAA9 524 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 FGFBP3Q8TAT2 258 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ATL1Q8WXF7 558 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 IFT81Q8WYA0 676 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ATP6V1E2Q96A05 226 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SLC22A18Q96BI1 424 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD9Q96BM1 317 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 HAUS1Q96CS2 278 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF689Q96CS4 500 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 MOCOSQ96EN8 888 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NRBF2Q96F24 287 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ZBED3Q96IU2 234 aaPredicted RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD36BP1Q96IX9 119 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CNDP1Q96KN2 507 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TSNARE1Q96NA8 513 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 GBP5Q96PP8 586 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 USP28Q96RU2 1077 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TESK2Q96S53 571 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 TSG101Q99816 390 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 RHOXF2Q9BQY4 288 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 NUDT16L1Q9BRJ7 211 aaKnown RBP1.9□□□□□ -2.11
HMGB1-208ENST00000490788 SYT11Q9BT88 431 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC106Q9BWC9 280 aa1.9□□□□□ -2.11
HMGB1-208ENST00000490788 CARD6Q9BX69 1037 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms