RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 CDK9P50750 372 aaKnown RBP14.8□□□□□ -0.04
USP48-210ENST00000489108 ACKR1Q16570 336 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 DCST1Q5T197 706 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 DGAT2L6Q6ZPD8 337 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 VN1R5Q7Z5H4 357 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 OR4N5Q8IXE1 308 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 RNF10Q8N5U6 811 aaKnown RBP14.8□□□□□ -0.04
USP48-210ENST00000489108 PPWD1Q96BP3 646 aaKnown RBP14.8□□□□□ -0.04
USP48-210ENST00000489108 ZNF597Q96LX8 424 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 GNRHR2Q96P88 292 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 MAPKAP1Q9BPZ7 522 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 UGT2B28Q9BY64 529 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 NDRG3Q9UGV2 375 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 NPFFR2Q9Y5X5 522 aa14.8□□□□□ -0.04
USP48-210ENST00000489108 NBEAL1Q6ZS30 2694 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 SIAH2O43255 324 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 KRT14P02533 472 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 FGGP02679 453 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 HPNP05981 417 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 GNAZP19086 355 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 GDF5P43026 501 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 MSH2P43246 934 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 SLCO1A2P46721 670 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 PPP1R3AQ16821 1122 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 C18orf21Q32NC0 220 aaPredicted RBP14.79□□□□□ -0.04
USP48-210ENST00000489108 ADNP2Q6IQ32 1131 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 HEATR5AQ86XA9 2040 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 PHC2Q8IXK0 858 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 DND1Q8IYX4 353 aaKnown RBP14.79□□□□□ -0.04
USP48-210ENST00000489108 KRT78Q8N1N4 520 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 TXLNBQ8N3L3 684 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 SLC44A1Q8WWI5 657 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 DIO2Q92813 273 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 F2RL3Q96RI0 385 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 CCL19Q99731 98 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 NT5DC2Q9H857 520 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 UBTD1Q9HAC8 227 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 LYRM4Q9HD34 91 aa14.79□□□□□ -0.04
USP48-210ENST00000489108 ANKRD33BA6NCL7 494 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 CDC7O00311 574 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 WDR47O94967 919 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 CCDC175P0C221 793 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 COX7A2P14406 83 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 FPR1P21462 350 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 GSTM2P28161 218 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 SOX18P35713 384 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 MAGEA3P43357 314 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 RPL21P46778 160 aaKnown RBP14.78□□□□□ -0.04
USP48-210ENST00000489108 STT3AP46977 705 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 NTRK2Q16620 822 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 EIPR1Q53HC9 387 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 NHSL2Q5HYW2 709 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 BICRALQ6AI39 1079 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 TMEM64Q6YI46 380 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 ZNF793Q6ZN11 406 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 UBE3DQ7Z6J8 389 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 PPP1R14CQ8TAE6 165 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 MAIP1Q8WWC4 291 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 ABTB1Q969K4 478 aaPredicted RBP14.78□□□□□ -0.04
USP48-210ENST00000489108 PDLIM5Q96HC4 596 aaKnown RBP14.78□□□□□ -0.04
USP48-210ENST00000489108 DGAT2Q96PD7 388 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 GAL3ST4Q96RP7 486 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 BAG1Q99933 345 aaPredicted RBP14.78□□□□□ -0.04
USP48-210ENST00000489108 EGFL8Q99944 293 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 UBQLN3Q9H347 655 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 ZNF490Q9ULM2 529 aaPredicted RBP14.78□□□□□ -0.04
USP48-210ENST00000489108 VWA7Q9Y334 891 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 TESMINQ9Y4I5 508 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 MED12LQ86YW9 2145 aa14.78□□□□□ -0.04
USP48-210ENST00000489108 SONP18583 2426 aaKnown RBP14.77□□□□□ -0.04
USP48-210ENST00000489108 DEFB108AA8MXU0 73 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 CTIFO43310 598 aaKnown RBP14.77□□□□□ -0.05
USP48-210ENST00000489108 FGF17O60258 216 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 C8BP07358 591 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 HPDP32754 393 aaPredicted RBP14.77□□□□□ -0.05
USP48-210ENST00000489108 NAGLUP54802 743 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 IGLV3-21P80748 117 aaPredicted RBP14.77□□□□□ -0.05
USP48-210ENST00000489108 RCAN2Q14206 197 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 TOMM20Q15388 145 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 WIPI1Q5MNZ9 446 aaPredicted RBP14.77□□□□□ -0.05
USP48-210ENST00000489108 TBCELQ5QJ74 424 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 FNDC7Q5VTL7 733 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 HMBOX1Q6NT76 420 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 PLXDC2Q6UX71 529 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 TMEM139Q8IV31 216 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 ZPLD1Q8TCW7 415 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 INTS12Q96CB8 462 aaKnown RBP14.77□□□□□ -0.05
USP48-210ENST00000489108 RBM18Q96H35 190 aaKnown RBP14.77□□□□□ -0.05
USP48-210ENST00000489108 WFIKKN1Q96NZ8 548 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 SFXN3Q9BWM7 321 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 SLC17A6Q9P2U8 582 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 GUCA1BQ9UMX6 200 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 IKBKGQ9Y6K9 419 aa14.77□□□□□ -0.05
USP48-210ENST00000489108 A8MXE2 369 aa14.76□□□□□ -0.05
USP48-210ENST00000489108 RTCAO00442 366 aaKnown RBP14.76□□□□□ -0.05
USP48-210ENST00000489108 PRAMEF4O60810 478 aa14.76□□□□□ -0.05
USP48-210ENST00000489108 RCBTB2O95199 551 aa14.76□□□□□ -0.05
USP48-210ENST00000489108 CYP4B1P13584 511 aa14.76□□□□□ -0.05
USP48-210ENST00000489108 ATP5A1P25705 553 aaKnown RBP14.76□□□□□ -0.05
USP48-210ENST00000489108 TGM3Q08188 693 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms