RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ANKFN1Q8N957 763 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 ZCCHC10Q8TBK6 192 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 NETO1Q8TDF5 533 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 UCN3Q969E3 161 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 PPWD1Q96BP3 646 aaKnown RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 UGT2B28Q9BY64 529 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 RAD21L1Q9H4I0 556 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 SLC35C2Q9NQQ7 365 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 SIRT3Q9NTG7 399 aaPredicted RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 SOHLH2Q9NX45 425 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 SEMA5BQ9P283 1151 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 FBXW2Q9UKT8 454 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 CES1P1Q9UKY3 287 aa13.4□□□□□ -0.26
CUX1-209ENST00000487284 CNOT11Q9UKZ1 510 aaKnown RBP13.4□□□□□ -0.26
CUX1-209ENST00000487284 IGHV5-10-1A0A0J9YXX1 117 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 ZBTB11O95625 1053 aaPredicted RBP13.39□□□□□ -0.27
CUX1-209ENST00000487284 NTRK1P04629 796 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 RAP2AP10114 183 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 ZNF10P21506 573 aaPredicted RBP13.39□□□□□ -0.27
CUX1-209ENST00000487284 PCGF2P35227 344 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 SOAT1P35610 550 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 AQP4P55087 323 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 MANFP55145 182 aaKnown RBP13.39□□□□□ -0.27
CUX1-209ENST00000487284 SPIDRQ14159 915 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 ATP6AP1Q15904 470 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 FAM98BQ52LJ0 330 aaKnown RBP13.39□□□□□ -0.27
CUX1-209ENST00000487284 SAXO2Q658L1 398 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 TMEM214Q6NUQ4 689 aaKnown RBP13.39□□□□□ -0.27
CUX1-209ENST00000487284 FAM180BQ6P0A1 224 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 SLC48A1Q6P1K1 146 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 ENPP6Q6UWR7 440 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 EID3Q8N140 333 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 CARFQ8N187 725 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 DEFB124Q8NES8 71 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 OR4D9Q8NGE8 314 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 FBXO30Q8TB52 745 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 KLHL6Q8WZ60 621 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 TCTN2Q96GX1 697 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 CENPNQ96H22 339 aaPredicted RBP13.39□□□□□ -0.27
CUX1-209ENST00000487284 RNF145Q96MT1 663 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 SEPHS2Q99611 448 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 MAPKAP1Q9BPZ7 522 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 DPH2Q9BQC3 489 aaPredicted RBP13.39□□□□□ -0.27
CUX1-209ENST00000487284 NLNQ9BYT8 704 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 SEMA6AQ9H2E6 1030 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 MAGIXQ9H6Y5 334 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 PDP2Q9P2J9 529 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 PHF11Q9UIL8 331 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 UTS2RQ9UKP6 389 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 ACSL6Q9UKU0 697 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 LRCH1Q9Y2L9 728 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 V9GYQ6 96 aa13.39□□□□□ -0.27
CUX1-209ENST00000487284 RNF103-CHMP3A0A140T963 221 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 MYO1GB0I1T2 1018 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 TPST1O60507 370 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 PRKRAO75569 313 aaKnown RBP13.38□□□□□ -0.27
CUX1-209ENST00000487284 RFPL3O75679 317 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 PRKD3O94806 890 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 SERPINA1P01009 418 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 NUDT7P0C024 238 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 NR2F6P10588 404 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 SPTBP11277 2137 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 ALOX12P18054 663 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 NTSP30990 170 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 CHI3L1P36222 383 aaPredicted RBP13.38□□□□□ -0.27
CUX1-209ENST00000487284 MLLT3P42568 568 aaPredicted RBP13.38□□□□□ -0.27
CUX1-209ENST00000487284 TNFRSF17Q02223 184 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 CHRNB3Q05901 458 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 RBBP4Q09028 425 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 C16orf72Q14CZ0 275 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 TRIP6Q15654 476 aaKnown RBP13.38□□□□□ -0.27
CUX1-209ENST00000487284 CEBPEQ15744 281 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 NKG7Q16617 165 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 CLPPQ16740 277 aaPredicted RBP13.38□□□□□ -0.27
CUX1-209ENST00000487284 COX20Q5RI15 118 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 C18orf63Q68DL7 685 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 SLITRK4Q8IW52 837 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 CSNK1A1LQ8N752 337 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 C11orf65Q8NCR3 313 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 RCBTB1Q8NDN9 531 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 OR5AK3PQ8NH89 298 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 ZFP28Q8NHY6 868 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 EME1Q96AY2 570 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 NEURL3Q96EH8 262 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 CCDC74BQ96LY2 380 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 AMDHD1Q96NU7 426 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 BTBD9Q96Q07 612 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 DPYSL5Q9BPU6 564 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 CHID1Q9BWS9 393 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 TMEM38AQ9H6F2 299 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 PDE7BQ9NP56 450 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 PRDM9Q9NQV7 894 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 TOR4AQ9NXH8 423 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 KCMF1Q9P0J7 381 aa13.38□□□□□ -0.27
CUX1-209ENST00000487284 MRPS2Q9Y399 296 aaKnown RBP13.38□□□□□ -0.27
CUX1-209ENST00000487284 H0YJX3 145 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 PGRMC2O15173 223 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 TOX3O15405 576 aaPredicted RBP13.37□□□□□ -0.27
CUX1-209ENST00000487284 B3GALT2O43825 422 aa13.37□□□□□ -0.27
CUX1-209ENST00000487284 GFRA3O60609 400 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms