RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 INPP5JQ15735 1006 aaPredicted RBP16■□□□□ 0.15
VIM-205ENST00000485947 NOXRED1Q6NXP6 359 aa16■□□□□ 0.15
VIM-205ENST00000485947 TMEM205Q6UW68 189 aa16■□□□□ 0.15
VIM-205ENST00000485947 SHISA6Q6ZSJ9 500 aa16■□□□□ 0.15
VIM-205ENST00000485947 PAGE2Q7Z2X7 111 aa16■□□□□ 0.15
VIM-205ENST00000485947 KBTBD2Q8IY47 623 aa16■□□□□ 0.15
VIM-205ENST00000485947 C1orf52Q8N6N3 182 aaKnown RBP16■□□□□ 0.15
VIM-205ENST00000485947 Q8NA96 180 aa16■□□□□ 0.15
VIM-205ENST00000485947 RP9Q8TA86 221 aaKnown RBP16■□□□□ 0.15
VIM-205ENST00000485947 TSPEARQ8WU66 669 aa16■□□□□ 0.15
VIM-205ENST00000485947 RGMAQ96B86 450 aa16■□□□□ 0.15
VIM-205ENST00000485947 NSL1Q96IY1 281 aa16■□□□□ 0.15
VIM-205ENST00000485947 QRFPRQ96P65 431 aa16■□□□□ 0.15
VIM-205ENST00000485947 WDR77Q9BQA1 342 aaPredicted RBP16■□□□□ 0.15
VIM-205ENST00000485947 YIPF2Q9BWQ6 316 aa16■□□□□ 0.15
VIM-205ENST00000485947 MRPL1Q9BYD6 325 aaKnown RBP16■□□□□ 0.15
VIM-205ENST00000485947 OR51B5Q9H339 312 aa16■□□□□ 0.15
VIM-205ENST00000485947 EPS8L2Q9H6S3 715 aa16■□□□□ 0.15
VIM-205ENST00000485947 MCM8Q9UJA3 840 aa16■□□□□ 0.15
VIM-205ENST00000485947 ADAM29Q9UKF5 820 aa16■□□□□ 0.15
VIM-205ENST00000485947 MAPRE3Q9UPY8 281 aa16■□□□□ 0.15
VIM-205ENST00000485947 CCDC88CQ9P219 2028 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 SERPINA7P05543 415 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 G6PDP11413 515 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 BCKDHAP12694 445 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 JAK1P23458 1154 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 TSFMP43897 325 aaKnown RBP15.99■□□□□ 0.15
VIM-205ENST00000485947 GSTM5P46439 218 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 ASMTP46597 345 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 MNAT1P51948 309 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 TGM3Q08188 693 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 RAPSNQ13702 412 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 AGKQ53H12 422 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 CRB2Q5IJ48 1285 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 B3GNTL1Q67FW5 361 aaPredicted RBP15.99■□□□□ 0.15
VIM-205ENST00000485947 ISLR2Q6UXK2 745 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 COMMD6Q7Z4G1 85 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 LAPTM4BQ86VI4 370 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 ZC3H7AQ8IWR0 971 aaKnown RBP15.99■□□□□ 0.15
VIM-205ENST00000485947 LIX1Q8N485 282 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 DTWD1Q8N5C7 304 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 GLB1L3Q8NCI6 653 aaPredicted RBP15.99■□□□□ 0.15
VIM-205ENST00000485947 METTL21AQ8WXB1 218 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 OR1F2PQ96R84 312 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 SLC6A16Q9GZN6 736 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 REXO4Q9GZR2 422 aaKnown RBP15.99■□□□□ 0.15
VIM-205ENST00000485947 ARL8BQ9NVJ2 186 aa15.99■□□□□ 0.15
VIM-205ENST00000485947 C19orf25Q9UFG5 118 aaPredicted RBP15.99■□□□□ 0.15
VIM-205ENST00000485947 IGHV1-45A0A0A0MS14 117 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 DYTNA2CJ06 578 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 LRIT2A6NDA9 550 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 PLPP1O14494 284 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 PCDH7O60245 1069 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 PRMT3O60678 531 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 ALOX12BO75342 701 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 SLC22A3O75751 556 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 UNC5CO95185 931 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 SERPIND1P05546 499 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 ESRRAP11474 423 aaPredicted RBP15.98■□□□□ 0.15
VIM-205ENST00000485947 COX6A1P12074 109 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 COX4I1P13073 169 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 SDC1P18827 310 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 RASSF2P50749 326 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 CLNS1AP54105 237 aaKnown RBP15.98■□□□□ 0.15
VIM-205ENST00000485947 HYAL2Q12891 473 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 MFAP5Q13361 173 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 PAOXQ6QHF9 649 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 NUDT13Q86X67 352 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 FAM26EQ8N5C1 309 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 OR9A4Q8NGU2 314 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 GAL3ST3Q96A11 431 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 THOC3Q96J01 351 aaKnown RBP15.98■□□□□ 0.15
VIM-205ENST00000485947 F2RL3Q96RI0 385 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 DPY30Q9C005 99 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 ZNF700Q9H0M5 742 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 MKL2Q9ULH7 1088 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 DLGAP4Q9Y2H0 992 aa15.98■□□□□ 0.15
VIM-205ENST00000485947 RP1L1Q8IWN7 2480 aaPredicted RBP15.97■□□□□ 0.15
VIM-205ENST00000485947 NUP210LQ5VU65 1888 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 CREBBPQ92793 2442 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 FAM234BA2RU67 622 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 BBIP1A8MTZ0 92 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 ANKRD28O15084 1053 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 SH3BGRLO75368 114 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 CBX6O95503 412 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 ANXA4P09525 319 aaPredicted RBP15.97■□□□□ 0.15
VIM-205ENST00000485947 C8orf89P0DMQ9 161 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 T-ENOLP0DO92 83 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 HNRNPH1P31943 449 aaKnown RBP15.97■□□□□ 0.15
VIM-205ENST00000485947 CLDN8P56748 225 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 C21orf58P58505 322 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 RAE1P78406 368 aaKnown RBP15.97■□□□□ 0.15
VIM-205ENST00000485947 ZNF763Q0D2J5 394 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 CYLC2Q14093 348 aaPredicted RBP15.97■□□□□ 0.15
VIM-205ENST00000485947 TLR1Q15399 786 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 PLEKHN1Q494U1 663 aaPredicted RBP15.97■□□□□ 0.15
VIM-205ENST00000485947 TOR1AIP1Q5JTV8 583 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 TRIM40Q6P9F5 258 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 ABHD13Q7L211 337 aa15.97■□□□□ 0.15
VIM-205ENST00000485947 TMEM151BQ8IW70 566 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms