RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ADNP2Q6IQ32 1131 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 TMEM205Q6UW68 189 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 SCIMPQ6UWF3 145 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 HSDL2Q6YN16 418 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 SZRD1Q7Z422 152 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 COMMD6Q7Z4G1 85 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 C1orf52Q8N6N3 182 aaKnown RBP7.53□□□□□ -1.2
USP40-216ENST00000485943 EXD3Q8N9H8 876 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 OR4K14Q8NGD5 310 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 WDR20Q8TBZ3 569 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 AGAP11Q8TF27 550 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 THAP3Q8WTV1 239 aaPredicted RBP7.53□□□□□ -1.2
USP40-216ENST00000485943 GAL3ST4Q96RP7 486 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 TMEM109Q9BVC6 243 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 SORBS1Q9BX66 1292 aaKnown RBP7.53□□□□□ -1.2
USP40-216ENST00000485943 C1QTNF3Q9BXJ4 246 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 BRINP2Q9C0B6 783 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 C12orf65Q9H3J6 166 aaKnown RBP7.53□□□□□ -1.2
USP40-216ENST00000485943 ZBTB26Q9HCK0 441 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 PSD3Q9NYI0 1048 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 LUZP4Q9P127 313 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 SLC17A7Q9P2U7 560 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 ADAM29Q9UKF5 820 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 B3GNT3Q9Y2A9 372 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 TSC22D4Q9Y3Q8 395 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 ACTL7BQ9Y614 415 aa7.53□□□□□ -1.2
USP40-216ENST00000485943 MED13Q9UHV7 2174 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 LOC102723996A0A087X1L8 192 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 TRAV17A0A0B4J275 112 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 OR2W5A6NFC9 320 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 GABRR3A8MPY1 467 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 A8MVJ9 347 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 CAPN14A8MX76 684 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 TMEM114B3SHH9 223 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 MASP2O00187 686 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 SKAP2O75563 359 aaPredicted RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 SNUPNO95149 360 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 F10P00742 488 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 ANXA4P09525 319 aaPredicted RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 ITGAMP11215 1152 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 GRK2P25098 689 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 KRT20P35900 424 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 GSTM5P46439 218 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 SLC26A5P58743 744 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 MAGOHP61326 146 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 RPL38P63173 70 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 HMGCS1Q01581 520 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 RHAGQ02094 409 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 FOLH1Q04609 750 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PCDH1Q08174 1060 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 ZNF763Q0D2J5 394 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 MAD2L1Q13257 205 aaPredicted RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 STX3Q13277 289 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 ZNF169Q14929 603 aaPredicted RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 PCLAFQ15004 111 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PCOLCEQ15113 449 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 NDUFAF5Q5TEU4 345 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 FCRLBQ6BAA4 426 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 RNF111Q6ZNA4 994 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 ZCCHC23Q6ZST2 131 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 OR4N5Q8IXE1 308 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 CLYBLQ8N0X4 340 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 METTL4Q8N3J2 472 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 ZNF843Q8N446 348 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 TMEM178AQ8NBL3 297 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 MORN4Q8NDC4 146 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 B3GNT7Q8NFL0 401 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 OR1N1Q8NGS0 311 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 SLC22A8Q8TCC7 542 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 CPT1CQ8TCG5 803 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 MZB1Q8WU39 189 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 ASB15Q8WXK1 588 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 RIT1Q92963 219 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 NCLNQ969V3 563 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PNPLA2Q96AD5 504 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 CHMP6Q96FZ7 201 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PGM2Q96G03 612 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PPP3R2Q96LZ3 170 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 KCNA7Q96RP8 456 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 LMF1Q96S06 567 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 CSF3RQ99062 836 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PRPF18Q99633 342 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 SMAD5Q99717 465 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 MECRQ9BV79 373 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 EBPLQ9BY08 206 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 GSTO2Q9H4Y5 243 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 CDCP1Q9H5V8 836 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 DDX31Q9H8H2 851 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 SYNPO2LQ9H987 977 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 LRTM1Q9HBL6 345 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 SSU72Q9NP77 194 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 MMP25Q9NPA2 562 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 NECTIN3Q9NQS3 549 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PRDM7Q9NQW5 492 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 FARSBQ9NSD9 589 aaKnown RBP7.52□□□□□ -1.21
USP40-216ENST00000485943 HPF1Q9NWY4 346 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 BCAP29Q9UHQ4 241 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 MCM8Q9UJA3 840 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 PPT2Q9UMR5 302 aa7.52□□□□□ -1.21
USP40-216ENST00000485943 EIF3LQ9Y262 564 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms