RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PIGAP37287 484 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 ARL1P40616 181 aaPredicted RBP19.92■□□□□ 0.78
USP40-215ENST00000484528 SERPINB8P50452 374 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 NEK2P51955 445 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 KRTAP10-9P60411 292 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 HERVK_113P63132 956 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 ERVK-8P63133 956 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 PHEXP78562 749 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 KLC3Q6P597 504 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 CCDC91Q7Z6B0 441 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 CCDC71Q8IV32 467 aaPredicted RBP19.92■□□□□ 0.78
USP40-215ENST00000484528 PLD6Q8N2A8 252 aaKnown RBP19.92■□□□□ 0.78
USP40-215ENST00000484528 ZCCHC7Q8N3Z6 543 aaKnown RBP19.92■□□□□ 0.78
USP40-215ENST00000484528 GOLM1Q8NBJ4 401 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 RBM18Q96H35 190 aaKnown RBP19.92■□□□□ 0.78
USP40-215ENST00000484528 SGCZQ96LD1 299 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 GPR78Q96P69 363 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 GAL3ST4Q96RP7 486 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 SMC6Q96SB8 1091 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 ERVK-6Q9BXR3 956 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 SEMA4BQ9NPR2 832 aaPredicted RBP19.92■□□□□ 0.78
USP40-215ENST00000484528 PNPLA3Q9NST1 481 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 ZNF358Q9NW07 568 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 ERVK-19Q9WJR5 959 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 RNF6Q9Y252 685 aa19.92■□□□□ 0.78
USP40-215ENST00000484528 NKX2-6A6NCS4 301 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 H0YIV9 168 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 DYRK3O43781 588 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 KLK8O60259 260 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 GBAP04062 536 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 NR2F6P10588 404 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 TLX1P31314 330 aaPredicted RBP19.91■□□□□ 0.78
USP40-215ENST00000484528 BSGP35613 385 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 BUD31P41223 144 aaPredicted RBP19.91■□□□□ 0.78
USP40-215ENST00000484528 CKAP4Q07065 602 aaKnown RBP19.91■□□□□ 0.78
USP40-215ENST00000484528 PCBP2Q15366 365 aaKnown RBP eCLIP19.91■□□□□ 0.78
USP40-215ENST00000484528 PIGGQ5H8A4 983 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 TECRLQ5HYJ1 363 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 NDUFAF5Q5TEU4 345 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 TMEM211Q6ICI0 200 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 CYP20A1Q6UW02 462 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 PTGR2Q8N8N7 351 aaPredicted RBP19.91■□□□□ 0.78
USP40-215ENST00000484528 OR5M3Q8NGP4 307 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 NUBPLQ8TB37 319 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 SLC22A8Q8TCC7 542 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 TANKQ92844 425 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 UCN3Q969E3 161 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 REPS1Q96D71 796 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 FBXL20Q96IG2 436 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 CDK15Q96Q40 435 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 UCK2Q9BZX2 261 aa19.91■□□□□ 0.78
USP40-215ENST00000484528 SPG11Q96JI7 2443 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 A0A0A6YYD5 115 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ATP6AP2A0A1C7CYW4 349 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 A0A1W2PR48 441 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 PROM1O43490 865 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 OR10H2O60403 315 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ATP6AP2O75787 350 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 LRATO95237 230 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 NADKO95544 446 aaPredicted RBP19.9■□□□□ 0.78
USP40-215ENST00000484528 PTX3P26022 381 aaPredicted RBP19.9■□□□□ 0.78
USP40-215ENST00000484528 SSTR2P30874 369 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 PHBP35232 272 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 NUP107P57740 925 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 PMPCAQ10713 525 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 FOXO1Q12778 655 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ZNF267Q14586 743 aaPredicted RBP19.9■□□□□ 0.78
USP40-215ENST00000484528 MPEG1Q2M385 716 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 GXYLT1Q4G148 440 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 PRAMEF20Q5VT98 475 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 MRM1Q6IN84 353 aaKnown RBP19.9■□□□□ 0.78
USP40-215ENST00000484528 RGS9BPQ6ZS82 235 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ST13P4Q8IZP2 240 aaPredicted RBP19.9■□□□□ 0.78
USP40-215ENST00000484528 FAM109AQ8N4B1 249 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 CHTF18Q8WVB6 975 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 RND1Q92730 232 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ART5Q96L15 291 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 SPOCK3Q9BQ16 436 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ENKD1Q9H0I2 346 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ACSS3Q9H6R3 686 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 IL1RL2Q9HB29 575 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 LYARQ9NX58 379 aaKnown RBP19.9■□□□□ 0.78
USP40-215ENST00000484528 TSC22D4Q9Y3Q8 395 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ASB4Q9Y574 426 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 EXPH5Q8NEV8 1989 aa19.9■□□□□ 0.78
USP40-215ENST00000484528 ACSL3O95573 720 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 GPR75O95800 540 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 AIFM1O95831 613 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 FAM58BPP0C7Q3 252 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 ZNF791Q3KP31 576 aaPredicted RBP19.89■□□□□ 0.77
USP40-215ENST00000484528 ARHGAP21Q5T5U3 1957 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 ZNF585AQ6P3V2 769 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 LYPD8Q6UX82 237 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 TRILQ7L0X0 811 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 NUDT13Q86X67 352 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 FAM13CQ8NE31 585 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 OR52B6Q8NGF0 335 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 WDR20Q8TBZ3 569 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 ASB5Q8WWX0 329 aa19.89■□□□□ 0.77
USP40-215ENST00000484528 SPACA9Q96E40 222 aaPredicted RBP19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms