RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SERTAD2Q14140 314 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 DPY19L1Q2PZI1 675 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 FAM174BQ3ZCQ3 159 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 SPANXN4Q5MJ08 99 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 OR4F3Q6IEY1 312 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 ERMP1Q7Z2K6 904 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 CAMKMTQ7Z624 323 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 VASH2Q86V25 355 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 FUNDC1Q8IVP5 155 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 CCDC116Q8IYX3 515 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 SAMD14Q8IZD0 417 aaPredicted RBP11.48□□□□□ -0.57
SDC1-206ENST00000482879 C7orf57Q8NEG2 295 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 GATA6Q92908 595 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 CIDECQ96AQ7 238 aaPredicted RBP11.48□□□□□ -0.57
SDC1-206ENST00000482879 CNRIP1Q96F85 164 aaPredicted RBP11.48□□□□□ -0.57
SDC1-206ENST00000482879 ZNF764Q96H86 408 aaPredicted RBP11.48□□□□□ -0.57
SDC1-206ENST00000482879 ZNF681Q96N22 645 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 LRRC37BQ96QE4 947 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 EFHD1Q9BUP0 239 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 DUSP26Q9BV47 211 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 BHLHE41Q9C0J9 482 aaPredicted RBP11.48□□□□□ -0.57
SDC1-206ENST00000482879 MYLK2Q9H1R3 596 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 SEMA3GQ9NS98 782 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 TMEM45AQ9NWC5 275 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 IL17BQ9UHF5 180 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 PCDHGA6Q9Y5G7 932 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 MRPS18BQ9Y676 258 aaKnown RBP11.48□□□□□ -0.57
SDC1-206ENST00000482879 CAPN7Q9Y6W3 813 aa11.48□□□□□ -0.57
SDC1-206ENST00000482879 IGKV3D-11A0A0A0MRZ8 115 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 A0A1W2PS29 197 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 NR5A2O00482 541 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 PDPK1O15530 556 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 IGHEP01854 428 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 IFNA16P05015 189 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 IL6P05231 212 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 PGRP06401 933 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 SLC35E2P0CK97 266 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 LIFP15018 202 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 CD1EP15812 388 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 EFNA1P20827 205 aaPredicted RBP11.47□□□□□ -0.57
SDC1-206ENST00000482879 NTSP30990 170 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 MPIP34949 423 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 ZFP36L2P47974 494 aaKnown RBP11.47□□□□□ -0.57
SDC1-206ENST00000482879 KCNK10P57789 538 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 PHC1P78364 1004 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 IGLV3-21P80748 117 aaPredicted RBP11.47□□□□□ -0.57
SDC1-206ENST00000482879 SSPNQ14714 243 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 MPEG1Q2M385 716 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 BLOC1S3Q6QNY0 202 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 GK5Q6ZS86 529 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 LANCL3Q6ZV70 420 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 NATD1Q8N6N6 113 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 ZNF248Q8NDW4 579 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 OR8J2Q8NGG1 315 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 SNIP1Q8TAD8 396 aaKnown RBP11.47□□□□□ -0.57
SDC1-206ENST00000482879 KCNE4Q8WWG9 221 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 RBM18Q96H35 190 aaKnown RBP11.47□□□□□ -0.57
SDC1-206ENST00000482879 DGAT2Q96PD7 388 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 OR52E6Q96RD3 313 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 CCDC106Q9BWC9 280 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 PNO1Q9NRX1 252 aaKnown RBP11.47□□□□□ -0.57
SDC1-206ENST00000482879 DKK4Q9UBT3 224 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 CLDN16Q9Y5I7 305 aa11.47□□□□□ -0.57
SDC1-206ENST00000482879 A0A1W2PRB8 838 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 TCRBV16S1A1N1A0A5B0 115 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 SYNDIG1LA6NDD5 238 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 CCDC154A6NI56 674 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 A8MUA0 341 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 MYO1GB0I1T2 1018 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 SLC22A2O15244 555 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 CFLARO15519 480 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 KLK10O43240 276 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 OR10H2O60403 315 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 CREG1O75629 220 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 TNNI3P19429 210 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 OTX2P32243 289 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 STT3AP46977 705 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 NCBP2P52298 156 aaKnown RBP eCLIP11.46□□□□□ -0.57
SDC1-206ENST00000482879 MANFP55145 182 aaKnown RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 WNT3P56703 355 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 OR4D2P58180 307 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 PLIN5Q00G26 463 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 DUSP2Q05923 314 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 RCAN2Q14206 197 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 CEBPEQ15744 281 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 VPS26BQ4G0F5 336 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 TIGD2Q4W5G0 525 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 ANXA8L1Q5VT79 327 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 TMEM205Q6UW68 189 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 CPEB2Q7Z5Q1 589 aaKnown RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 ANKRD37Q7Z713 158 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 ST13P4Q8IZP2 240 aaPredicted RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 LRRC25Q8N386 305 aaPredicted RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 VPS37AQ8NEZ2 397 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 VPS33AQ96AX1 596 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 PPWD1Q96BP3 646 aaKnown RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 SPDL1Q96EA4 605 aa11.46□□□□□ -0.57
SDC1-206ENST00000482879 ZBED6CLQ96FA7 236 aaPredicted RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 PELOQ9BRX2 385 aaKnown RBP11.46□□□□□ -0.57
SDC1-206ENST00000482879 DPH1Q9BZG8 443 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms