RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 SNX15Q9NRS6 342 aa6.48□□□□□ -1.37
HDAC3-207ENST00000475549 ZNF358Q9NW07 568 aa6.48□□□□□ -1.37
HDAC3-207ENST00000475549 SPRR3Q9UBC9 169 aa6.48□□□□□ -1.37
HDAC3-207ENST00000475549 OPTCQ9UBM4 332 aa6.48□□□□□ -1.37
HDAC3-207ENST00000475549 RNF11Q9Y3C5 154 aa6.48□□□□□ -1.37
HDAC3-207ENST00000475549 CHCHD2Q9Y6H1 151 aaPredicted RBP6.48□□□□□ -1.37
HDAC3-207ENST00000475549 NF1P21359 2839 aa6.48□□□□□ -1.37
HDAC3-207ENST00000475549 CCDC168Q8NDH2 2452 aa6.48□□□□□ -1.37
HDAC3-207ENST00000475549 PKDREJQ9NTG1 2253 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 NCOA6Q14686 2063 aaPredicted RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 A0A096LPK6 155 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 A0A0G2JNJ9 132 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 LRRC3CA6NJW4 275 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PPP6CO00743 305 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 OR7A17O14581 309 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PGRMC2O15173 223 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 KLHL2O95198 593 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 GBAP04062 536 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 S100BP04271 92 aaPredicted RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PTX3P26022 381 aaPredicted RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ACVR2AP27037 513 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 MSX1P28360 303 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SSTR2P30874 369 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 CASQ1P31415 396 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 STX2P32856 288 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SOX18P35713 384 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SSR2P43308 183 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PIK3CGP48736 1102 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ALDH18A1P54886 795 aaKnown RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 DLX5P56178 289 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SLC37A1P57057 533 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ETF1P62495 437 aaKnown RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 TNFRSF17Q02223 184 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PLGLB1Q02325 96 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 CAV1Q03135 178 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 TLE4Q04727 773 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 DDX39BQ13838 428 aaKnown RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 RCN2Q14257 317 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SLC10A1Q14973 349 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ACAP2Q15057 778 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PCBP2Q15366 365 aaKnown RBP eCLIP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 CPSF6Q16630 551 aaKnown RBP eCLIP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 NDUFAF5Q5TEU4 345 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 LIPJQ5W064 366 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 TMEM211Q6ICI0 200 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ZNF585AQ6P3V2 769 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 OPN5Q6U736 354 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SYT10Q6XYQ8 523 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 FAM47EQ6ZV65 393 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SEM1Q6ZVN7 128 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 GOLGA7Q7Z5G4 137 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 TBC1D1Q86TI0 1168 aaPredicted RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SLC22A16Q86VW1 577 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 DMRTC2Q8IXT2 367 aaPredicted RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 FAM109AQ8N4B1 249 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 TMEM151AQ8N4L1 468 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ZNF441Q8N8Z8 693 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 L3MBTL4Q8NA19 623 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 OR10G3Q8NGC4 313 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 OR52B6Q8NGF0 335 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 OR5L2Q8NGL0 311 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PAQR8Q8TEZ7 354 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 RND1Q92730 232 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 UBE2E3Q969T4 207 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 RGMAQ96B86 450 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SPACA9Q96E40 222 aaPredicted RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 FBXL20Q96IG2 436 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SMC6Q96SB8 1091 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 LRRC1Q9BTT6 524 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 DDX31Q9H8H2 851 aaKnown RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 IPPKQ9H8X2 491 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 MCCC2Q9HCC0 563 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ZBTB26Q9HCK0 441 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 SACM1LQ9NTJ5 587 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 MS4A12Q9NXJ0 267 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 Q9UFV3 132 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 ITGB1BP2Q9UKP3 347 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 UTP11Q9Y3A2 253 aaKnown RBP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.47□□□□□ -1.37
HDAC3-207ENST00000475549 PCNX1Q96RV3 2341 aa6.47□□□□□ -1.37
HDAC3-207ENST00000475549 A0A087X1B8 175 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 OR14I1A6ND48 311 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 SYNDIG1LA6NDD5 238 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 FAM90A27PA6NNH2 459 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 KDM4EB2RXH2 506 aaPredicted RBP6.46□□□□□ -1.38
HDAC3-207ENST00000475549 FOXE1O00358 373 aaPredicted RBP6.46□□□□□ -1.38
HDAC3-207ENST00000475549 AQP7O14520 342 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 SUSD5O60279 629 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 TRIM3O75382 744 aaPredicted RBP6.46□□□□□ -1.38
HDAC3-207ENST00000475549 LRATO95237 230 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 GPR75O95800 540 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 AIFM1O95831 613 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 HOXD4P09016 255 aaPredicted RBP6.46□□□□□ -1.38
HDAC3-207ENST00000475549 SBK3P0C264 359 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 FBXO45P0C2W1 286 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 CT62P0C5K7 136 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 FAM58BPP0C7Q3 252 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 SLC35E2P0CK97 266 aa6.46□□□□□ -1.38
HDAC3-207ENST00000475549 HOXB1P14653 301 aaPredicted RBP6.46□□□□□ -1.38
HDAC3-207ENST00000475549 ALOX15P16050 662 aaPredicted RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms