RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 OR52A4PA6NMU1 304 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 ZAR1LA6NP61 321 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 TBX19O60806 448 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 COQ9O75208 318 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 SLC34A2O95436 690 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 IGFBP1P08833 259 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 OR12D1P0DN82 309 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 CRISP1P54107 249 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 RAB15P59190 212 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 SYPL1Q16563 259 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 SOWAHCQ53LP3 525 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 OR4C11Q6IEV9 310 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 ZNF793Q6ZN11 406 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 DEF8Q6ZN54 512 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 LACC1Q8IV20 430 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 TP53I13Q8NBR0 393 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 OR2A1Q8NGT9 310 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 CREB3L4Q8TEY5 395 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 S100ZQ8WXG8 99 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 PPP1R14BQ96C90 147 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 ZBED6CLQ96FA7 236 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 QRFPRQ96P65 431 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 PSD2Q9BQI7 771 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 DPH7Q9BTV6 452 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 RNF167Q9H6Y7 350 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 WBP11Q9Y2W2 641 aaKnown RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 DNMT3AQ9Y6K1 912 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 LRIT2A6NDA9 550 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 TMEM247A6NEH6 219 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 SLC28A2O43868 658 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 SOX14O95416 240 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 HSMCR30P0CW71 290 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 GRK3P35626 688 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 TRIM23P36406 574 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 FEN1P39748 380 aaKnown RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 CDC42P60953 191 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 PRDX1Q06830 199 aaKnown RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 NDUFAF5Q5TEU4 345 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 KIAA1161Q6NSJ0 714 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 LINC00299Q6ZSB3 139 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 PTCHD4Q6ZW05 846 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 SLC46A3Q7Z3Q1 461 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 HMGN2P46Q86SG4 172 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 COMTD1Q86VU5 262 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 XAGE5Q8WWM1 108 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 CAMK1GQ96NX5 476 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 COL21A1Q96P44 957 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 MAPKAP1Q9BPZ7 522 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 TREX2Q9BQ50 279 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 RSPH9Q9H1X1 276 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 GLIPR2Q9H4G4 154 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 NT5DC2Q9H857 520 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 DDX31Q9H8H2 851 aaKnown RBP8.48□□□□□ -1.05
SYNE1-217ENST00000466159 C11orf16Q9NQ32 467 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 DAPK2Q9UIK4 370 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 MOSPD1Q9UJG1 213 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 ACSL5Q9ULC5 683 aa8.48□□□□□ -1.05
SYNE1-217ENST00000466159 MDC1Q14676 2089 aaKnown RBP8.47□□□□□ -1.05
SYNE1-217ENST00000466159 DOCK8Q8NF50 2099 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 A0A0A6YYD5 115 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 LOC100506127A0A0U1RQW1 187 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 TTC36A6NLP5 189 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 C4orf51C9J302 202 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ALPPL2P10696 532 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ELAVL4P26378 380 aaKnown RBP8.47□□□□□ -1.05
SYNE1-217ENST00000466159 SSR2P43308 183 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 MAGEA8P43361 318 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 KCNJ5P48544 419 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 BCAP31P51572 246 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 TRIM16LQ309B1 348 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ARMCX4Q5H9R4 360 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 C7orf61Q8IZ16 206 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 NATD1Q8N6N6 113 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 MCFD2Q8NI22 146 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 IL4I1Q96RQ9 567 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 TMEM106CQ9BVX2 250 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ROGDIQ9GZN7 287 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 OR51E2Q9H255 320 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 OR51I1Q9H343 314 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 SFXN1Q9H9B4 322 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 KCNK12Q9HB15 430 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 GDE1Q9NZC3 331 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 REV1Q9UBZ9 1251 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 SEC14L3Q9UDX4 400 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ATG2AQ2TAZ0 1938 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 DSPPQ9NZW4 1301 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 ARRDC5A6NEK1 342 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 OR10H3O60404 316 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 SERPINB1P30740 379 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 GPC1P35052 558 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 BCL6P41182 706 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 SOX9P48436 509 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 RAB28P51157 221 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 PRKAG1P54619 331 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 TEKQ02763 1124 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 PIN1Q13526 163 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-217ENST00000466159 DOC2BQ14184 412 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 IRF3Q14653 427 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 OXA1LQ15070 435 aa8.47□□□□□ -1.05
SYNE1-217ENST00000466159 DUSP6Q16828 381 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms