RNA–Protein interactions for RNA: ENST00000465721.1

CNOT4-208, Transcript of CCR4-NOT transcription complex subunit 4, human

TSL 4

Gene CNOT4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT4-208	ENST00000465721	FBXW10	Q5XX13	1052 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	TRMT10B	Q6PF06	316 aa	Known RBP	10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	DGAT2L6	Q6ZPD8	337 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	ADAMTSL2	Q86TH1	951 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	KIF18B	Q86Y91	864 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	RASGEF1C	Q8N431	466 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	LIX1	Q8N485	282 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	SLC15A4	Q8N697	577 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	SPC24	Q8NBT2	197 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	TRIM58	Q8NG06	486 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	LINC01560	Q8TB33	94 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	ANKRD49	Q8WVL7	239 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	HSPBAP1	Q96EW2	488 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	WDR34	Q96EX3	536 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	SENP5	Q96HI0	755 aa	Predicted RBP	10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	MS4A14	Q96JA4	679 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	COX4I2	Q96KJ9	171 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	KCNC2	Q96PR1	638 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	NAT9	Q9BTE0	207 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	BEX4	Q9NWD9	120 aa	Predicted RBP	10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	GPRC5B	Q9NZH0	403 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	CNIH4	Q9P003	139 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	JKAMP	Q9P055	326 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	ZNF490	Q9ULM2	529 aa	Predicted RBP	10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	PSAT1	Q9Y617	370 aa		10.8	□□□□□ -0.68
CNOT4-208	ENST00000465721	PRR14L	Q5THK1	2151 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	ANK2	Q01484	3957 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	MBD3L4	A6NDZ8	208 aa	Predicted RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	MBD3L3	A6NE82	208 aa	Predicted RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	MBD3L5	A6NJ08	208 aa	Predicted RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	EEF1E1-BLOC1S5	C9J1V9	151 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	RTCA	O00442	366 aa	Known RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	TAPBP	O15533	448 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	EEF1E1	O43324	174 aa	Known RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	TRIM3	O75382	744 aa	Predicted RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	LY6G6D	O95868	133 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	C1QA	P02745	245 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	COX7A2	P14406	83 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	GDF1	P27539	372 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	DEK	P35659	375 aa	Known RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	PRSS12	P56730	875 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	TAS2R39	P59534	338 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	SHE	Q5VZ18	495 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	NSUN5P2	Q63ZY6	315 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	FRA10AC1	Q70Z53	315 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	DND1	Q8IYX4	353 aa	Known RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	NKAP	Q8N5F7	415 aa	Known RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	ACOT4	Q8N9L9	421 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	FAM13C	Q8NE31	585 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	NUDT8	Q8WV74	236 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	FBXL20	Q96IG2	436 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	ZNF597	Q96LX8	424 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	TIMP4	Q99727	224 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	DOHH	Q9BU89	302 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	MS4A8	Q9BY19	250 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	UBQLN3	Q9H347	655 aa		10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	PPAN	Q9NQ55	473 aa	Known RBP	10.79	□□□□□ -0.68
CNOT4-208	ENST00000465721	NCF1B	A6NI72	391 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	CD8B2	A6NJW9	211 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	NCF1C	A8MVU1	366 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	FAM171A2	A8MVW0	826 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	DNALI1	O14645	258 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	IL2RA	P01589	272 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	NCF1	P14598	390 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	EPOR	P19235	508 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	HIST1H1T	P22492	207 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	ATP5A1	P25705	553 aa	Known RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	AGFG1	P52594	562 aa	Known RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	NKX6-1	P78426	367 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	TGM3	Q08188	693 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	DOC2A	Q14183	400 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	EBP	Q15125	230 aa	Known RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	POU4F3	Q15319	338 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	NTRK2	Q16620	822 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	FBXO48	Q5FWF7	155 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721		Q5PR19	223 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	DCST1	Q5T197	706 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	FNDC7	Q5VTL7	733 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	STEAP4	Q687X5	459 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	PACS2	Q86VP3	889 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	ZC3HC1	Q86WB0	502 aa	Known RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	OR4N5	Q8IXE1	308 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	PM20D2	Q8IYS1	436 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	BBOF1	Q8ND07	529 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	JSRP1	Q96MG2	331 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	DGAT2	Q96PD7	388 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	GAL3ST4	Q96RP7	486 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	YIPF4	Q9BSR8	244 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	TBCD	Q9BTW9	1192 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	EFCAB11	Q9BUY7	163 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	ROGDI	Q9GZN7	287 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	WWTR1	Q9GZV5	400 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	ZNF395	Q9H8N7	513 aa	Predicted RBP	10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	DNAJC11	Q9NVH1	559 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	CTNNAL1	Q9UBT7	734 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	CHMP2B	Q9UQN3	213 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	IKBKG	Q9Y6K9	419 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	ABCA1	O95477	2261 aa		10.78	□□□□□ -0.68
CNOT4-208	ENST00000465721	NBEAL1	Q6ZS30	2694 aa		10.78	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms