RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CD9P21926 228 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 MARCKSL1P49006 195 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 FBXO48Q5FWF7 155 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 EGFLAMQ63HQ2 1017 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 ARHGAP11AQ6P4F7 1023 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 DRICH1Q6PGQ1 229 aaPredicted RBP6.59□□□□□ -1.36
SCN1A-204ENST00000423058 TRIM46Q7Z4K8 759 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 CMTM8Q8IZV2 173 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 LRTOMTQ8WZ04 291 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 CDKN2AIPNLQ96HQ2 116 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 OR51I1Q9H343 314 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 SLCO1B3Q9NPD5 702 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 SLAMF7Q9NQ25 335 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 TAS2R8Q9NYW2 309 aa6.59□□□□□ -1.36
SCN1A-204ENST00000423058 MAGED1Q9Y5V3 778 aaPredicted RBP6.59□□□□□ -1.36
SCN1A-204ENST00000423058 FUOMA2VDF0 154 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 A6NHS1 94 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 YJEFN3A6XGL0 299 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 STK17BO94768 372 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 KCNC4Q03721 635 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF460Q14592 562 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 EARS2Q5JPH6 523 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PAQR3Q6TCH7 311 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UEVLDQ8IX04 471 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TSEN2Q8NCE0 465 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 AURKBQ96GD4 344 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MYRFLQ96LU7 910 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM74Q96NL1 305 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 IL4I1Q96RQ9 567 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CENPOQ9BU64 300 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RANBP3Q9H6Z4 567 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 DYNLRB1Q9NP97 96 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PCM1Q15154 2024 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 AQP12BA6NM10 295 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ANKRD30BLA7E2S9 258 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PRKCGP05129 697 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ADORA3P0DMS8 318 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TSFMP43897 325 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 DAP3P51398 398 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CDNFQ49AH0 187 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MS4A13Q5J8X5 152 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OGFOD2Q6N063 350 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MRPL21Q7Z2W9 205 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 AQP12AQ8IXF9 295 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 THAP3Q8WTV1 239 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PYCR2Q96C36 320 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 HINT2Q9BX68 163 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 REEP4Q9H6H4 257 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 IL21RQ9HBE5 538 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 GIN1Q9NXP7 522 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 COL20A1Q9P218 1284 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 FBXL3Q9UKT7 428 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PLAGL1Q9UM63 463 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 REXO2Q9Y3B8 237 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RIPK3Q9Y572 518 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 SLIT2O94813 1529 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PNMTP11086 282 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 UBL4AP11441 157 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CBLP22681 906 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 GPX6P59796 221 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ADGRE1Q14246 886 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 COL28A1Q2UY09 1125 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 LPCAT4Q643R3 524 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 AGTRAPQ6RW13 159 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 GALNT10Q86SR1 603 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OR4N5Q8IXE1 308 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RDH10Q8IZV5 341 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RBM15BQ8NDT2 890 aaKnown RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OR6C4Q8NGE1 309 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RNF128Q8TEB7 428 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 SLC6A7Q99884 636 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CCDC32Q9BV29 185 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TSSK6Q9BXA6 273 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 HAO2Q9NYQ3 351 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PPM1HQ9ULR3 514 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 FOXE1O00358 373 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 EMC8O43402 210 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TLX2O43763 284 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 PRAMEF2O60811 474 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 GJA9P57773 515 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 MADCAM1Q13477 382 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 LRIT3Q3SXY7 679 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TXNDC8Q6A555 127 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF517Q6ZMY9 492 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-204ENST00000423058 LRRC55Q6ZSA7 311 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 DPY19L4Q7Z388 723 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 RNF130Q86XS8 419 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 LILRB2Q8N423 598 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 GLYATL2Q8WU03 294 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 STON2Q8WXE9 905 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 KREMEN1Q96MU8 473 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 LPAR4Q99677 370 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 CXorf21Q9HAI6 301 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 IL23AQ9NPF7 189 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 TMEM9Q9P0T7 183 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF541Q9H0D2 1346 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 A0A0U1RQF3 1178 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OR5H15A6NDH6 313 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OR5H14A6NHG9 310 aa6.58□□□□□ -1.36
SCN1A-204ENST00000423058 OR5H1A6NKK0 313 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms