RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ENOPH1Q9UHY7 261 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 SH3PXD2BA1X283 911 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 ANKDD1BA6NHY2 528 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 TMEM229AB2RXF0 380 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 TNFRSF11BO00300 401 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 KMOO15229 486 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 FLRT2O43155 660 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 RGS10O43665 173 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 GCM2O75603 506 aaPredicted RBP14.06□□□□□ -0.16
USP4-203ENST00000415188 KLHL18O94889 574 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 NTRK1P04629 796 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 KLK1P06870 262 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 ETFAP13804 333 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 RRM2P31350 389 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 CCR5P51681 352 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 C21orf59P57076 290 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 CDK3Q00526 305 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 CNTN1Q12860 1018 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 DEPDC1Q5TB30 811 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 METRNLQ641Q3 311 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 VN1R5Q7Z5H4 357 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 GALNT10Q86SR1 603 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 GLRX5Q86SX6 157 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 HEATR4Q86WZ0 1026 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 ARMC8Q8IUR7 673 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 OR4K1Q8NGD4 311 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 SPPL2AQ8TCT8 520 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 FAR1Q8WVX9 515 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 ADAMTS14Q8WXS8 1223 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 ZCCHC14Q8WYQ9 949 aaKnown RBP14.06□□□□□ -0.16
USP4-203ENST00000415188 OR5P2Q8WZ92 322 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 HRASLS5Q96KN8 279 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 ZNF300Q96RE9 604 aaPredicted RBP14.06□□□□□ -0.16
USP4-203ENST00000415188 MS4A8Q9BY19 250 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 NLNQ9BYT8 704 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 SPNS1Q9H2V7 528 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 EPS8L2Q9H6S3 715 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 MIEF1Q9NQG6 463 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 GPATCH2Q9NW75 528 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 PAK1IP1Q9NWT1 392 aaPredicted RBP14.06□□□□□ -0.16
USP4-203ENST00000415188 TOR4AQ9NXH8 423 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 NDUFAF4Q9P032 175 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 WARS2Q9UGM6 360 aaKnown RBP14.06□□□□□ -0.16
USP4-203ENST00000415188 ACSL5Q9ULC5 683 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 POFUT2Q9Y2G5 429 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 LYVE1Q9Y5Y7 322 aa14.06□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3DA0A087WVF3 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3IA0A087WXS9 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3EA0A087X179 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3KA0A087X1G2 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 FAM221BA6H8Z2 402 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 ARRDC5A6NEK1 342 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3FA6NER0 549 aaPredicted RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3LB9A6J9 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 CACNB4O00305 520 aaPredicted RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 SLC22A1O15245 554 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 DIRAS1O95057 198 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 GABARAPO95166 117 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 IL3P08700 152 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 INHBBP09529 407 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3HP0C7X1 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 DDCP20711 480 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TPP2P29144 1249 aaPredicted RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 MAGEA8P43361 318 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 STT3AP46977 705 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 ENTPD1P49961 510 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 CCR8P51685 355 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 GP2P55259 537 aaKnown RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 PCBP3P57721 371 aaKnown RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 TRA2BP62995 288 aaKnown RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 IL1RL1Q01638 556 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 DMPKQ09013 629 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 SUZ12Q15022 739 aaKnown RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 NPTX1Q15818 432 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 MPEG1Q2M385 716 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 COX20Q5RI15 118 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 MLIPQ5VWP3 458 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 KHDRBS2Q5VWX1 349 aaKnown RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3GQ6DHY5 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3CQ6IPX1 549 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 ANGPTL8Q6UXH0 198 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 PRSS48Q7RTY5 328 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TBC1D3Q8IZP1 549 aaPredicted RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 OR4C15Q8NGM1 316 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 OR5AR1Q8NGP9 310 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 B4GALNT2Q8NHY0 566 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 NFKBIDQ8NI38 313 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 FNDC8Q8TC99 324 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 SGCDQ92629 289 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 FCGR1BQ92637 280 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 MAL2Q969L2 176 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 FAM131CQ96AQ9 280 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 TAMM41Q96BW9 452 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 PPP1R14BQ96C90 147 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 FUNDC2Q9BWH2 189 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 NEUROD4Q9HD90 331 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 PLCXD1Q9NUJ7 323 aa14.05□□□□□ -0.16
USP4-203ENST00000415188 RALYQ9UKM9 306 aaKnown RBP14.05□□□□□ -0.16
USP4-203ENST00000415188 ZZEF1O43149 2961 aa14.04□□□□□ -0.16
USP4-203ENST00000415188 A0A0J9YVX5 310 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms