RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 A0A1W2PS29 197 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 HRKO00198 91 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 WWP2O00308 870 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 UBFD1O14562 309 aaKnown RBP13.76□□□□□ -0.21
LIMS4-201ENST00000413601 NME2P1O60361 137 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 OR10H2O60403 315 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 ULK1O75385 1050 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 WISP2O76076 250 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 ESRRBO95718 433 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 ENO1P06733 434 aaKnown RBP13.76□□□□□ -0.21
LIMS4-201ENST00000413601 CPA3P15088 417 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 CHN1P15882 459 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 NME2P22392 152 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 HTR6P50406 440 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 SSR4P51571 173 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 HK2P52789 917 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 MAPK12P53778 367 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 NAGLUP54802 743 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 RNF4P78317 190 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 IFFO1Q0D2I5 559 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 NDUFAF5Q5TEU4 345 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 OR52E8Q6IFG1 317 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.76□□□□□ -0.21
LIMS4-201ENST00000413601 ST13P4Q8IZP2 240 aaPredicted RBP13.76□□□□□ -0.21
LIMS4-201ENST00000413601 C1orf52Q8N6N3 182 aaKnown RBP13.76□□□□□ -0.21
LIMS4-201ENST00000413601 RDH11Q8TC12 318 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 AGAP11Q8TF27 550 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 CAVIN3Q969G5 261 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 PARD6BQ9BYG5 372 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 MID1IP1Q9NPA3 183 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 NMRK1Q9NWW6 199 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 VPS29Q9UBQ0 182 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 COPS7AQ9UBW8 275 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 OSGIN2Q9Y236 505 aa13.76□□□□□ -0.21
LIMS4-201ENST00000413601 GTF3C1Q12789 2109 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 DYRK3O43781 588 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 HSD3B1P14060 373 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 HSD3B2P26439 372 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 PIK3R1P27986 724 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 KCNK10P57789 538 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 DNAJB13P59910 316 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 CSTF3Q12996 717 aaKnown RBP13.75□□□□□ -0.21
LIMS4-201ENST00000413601 ZNF267Q14586 743 aaPredicted RBP13.75□□□□□ -0.21
LIMS4-201ENST00000413601 SCIMPQ6UWF3 145 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 GFRALQ6UXV0 394 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 FRMD7Q6ZUT3 714 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 TRABD2AQ86V40 505 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 CYP4Z2PQ8N1L4 340 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 RIBC1Q8N443 379 aaPredicted RBP13.75□□□□□ -0.21
LIMS4-201ENST00000413601 OR8K3Q8NH51 312 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 CHTF18Q8WVB6 975 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 RIT1Q92963 219 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 TMEM125Q96AQ2 219 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 RASL10BQ96S79 203 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 PELOQ9BRX2 385 aaKnown RBP13.75□□□□□ -0.21
LIMS4-201ENST00000413601 CNPPD1Q9BV87 410 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 ACPTQ9BZG2 426 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 OXSMQ9NWU1 459 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 ERRFI1Q9UJM3 462 aaPredicted RBP13.75□□□□□ -0.21
LIMS4-201ENST00000413601 ERVK-11Q9UQG0 969 aa13.75□□□□□ -0.21
LIMS4-201ENST00000413601 EXPH5Q8NEV8 1989 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ASPDHA6ND91 283 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 OR6B1O95007 311 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 UNC5CO95185 931 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 IGKV3-11P04433 115 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 SLC35E2P0CK97 266 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 RNF224P0DH78 156 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 SOX3P41225 446 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 FOXA1P55317 472 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ERVK-8P63133 956 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 HMGCS1Q01581 520 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ZNF750Q32MQ0 723 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 CFAP157Q5JU67 520 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 IL20RBQ6UXL0 311 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 MDGA2Q7Z553 956 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 C9orf40Q8IXQ3 194 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 SRRM1Q8IYB3 904 aaKnown RBP13.74□□□□□ -0.21
LIMS4-201ENST00000413601 MMP21Q8N119 569 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 CPSF7Q8N684 471 aaKnown RBP13.74□□□□□ -0.21
LIMS4-201ENST00000413601 FAM98AQ8NCA5 519 aaKnown RBP13.74□□□□□ -0.21
LIMS4-201ENST00000413601 OR4K14Q8NGD5 310 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 OR5L2Q8NGL0 311 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 SSC4DQ8WTU2 575 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ASB15Q8WXK1 588 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 TM4SF18Q96CE8 201 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 FBXL20Q96IG2 436 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 APOPT1Q96IL0 206 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ART5Q96L15 291 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 FRMD6Q96NE9 622 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 SHCBP1LQ9BZQ2 653 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ROPN1BQ9BZX4 212 aaPredicted RBP13.74□□□□□ -0.21
LIMS4-201ENST00000413601 TSPAN10Q9H1Z9 355 aaPredicted RBP13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ROPN1Q9HAT0 212 aaPredicted RBP13.74□□□□□ -0.21
LIMS4-201ENST00000413601 SEC14L3Q9UDX4 400 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 LGALS13Q9UHV8 139 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 ERVK-19Q9WJR5 959 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 SLC5A6Q9Y289 635 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 PLLPQ9Y342 182 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 PCDHA9Q9Y5H5 950 aa13.74□□□□□ -0.21
LIMS4-201ENST00000413601 C1orf226A1L170 272 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms